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1:

Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus.

Wolf YI, Viboud C, Holmes EC, Koonin EV, Lipman DJ.

Biol Direct. 2006 Oct 26;1:34.

PMID: 17067369 [PubMed]

2:

The evolution of human influenza A viruses from 1999 to 2006: a complete genome study.

Bragstad K, Nielsen LP, Fomsgaard A.

Virol J. 2008 Mar 7;5:40.

PMID: 18325125 [PubMed - indexed for MEDLINE]

3:

Positive selection on the H3 hemagglutinin gene of human influenza virus A.

Bush RM, Fitch WM, Bender CA, Cox NJ.

Mol Biol Evol. 1999 Nov;16(11):1457-65.

PMID: 10555276 [PubMed - indexed for MEDLINE]

4:

Simultaneous amino acid substitutions at antigenic sites drive influenza A hemagglutinin evolution.

Shih AC, Hsiao TC, Ho MS, Li WH.

Proc Natl Acad Sci U S A. 2007 Apr 10;104(15):6283-8. Epub 2007 Mar 29.

PMID: 17395716 [PubMed - indexed for MEDLINE]

5:

Evolution of influenza A virus PB2 genes: implications for evolution of the ribonucleoprotein complex and origin of human influenza A virus.

Gorman OT, Donis RO, Kawaoka Y, Webster RG.

J Virol. 1990 Oct;64(10):4893-902.

PMID: 2398532 [PubMed - indexed for MEDLINE]

6:

Antigenic and genetic evolution of swine influenza A (H3N2) viruses in Europe.

de Jong JC, Smith DJ, Lapedes AS, Donatelli I, Campitelli L, Barigazzi G, Van Reeth K, Jones TC, Rimmelzwaan GF, Osterhaus AD, Fouchier RA.

J Virol. 2007 Apr;81(8):4315-22. Epub 2007 Feb 7.

PMID: 17287258 [PubMed - indexed for MEDLINE]

7:

Molecular evolution of hemagglutinin genes of H1N1 swine and human influenza A viruses.

Sugita S, Yoshioka Y, Itamura S, Kanegae Y, Oguchi K, Gojobori T, Nerome K, Oya A.

J Mol Evol. 1991 Jan;32(1):16-23.

PMID: 1901364 [PubMed - indexed for MEDLINE]

8:

Evolution of the hemagglutinin gene of influenza B virus was driven by both positive and negative selection pressures.

Zou S, Prud'homme I, Weber JM.

Virus Genes. 1997;14(3):181-5.

PMID: 9311562 [PubMed - indexed for MEDLINE]

9:

Changing selective pressure during antigenic changes in human influenza H3.

Blackburne BP, Hay AJ, Goldstein RA.

PLoS Pathog. 2008 May 2;4(5):e1000058.

PMID: 18451985 [PubMed - indexed for MEDLINE]

10:

Influence of host cell-mediated variation on the international surveillance of influenza A (H3N2) viruses.

Meyer WJ, Wood JM, Major D, Robertson JS, Webster RG, Katz JM.

Virology. 1993 Sep;196(1):130-7.

PMID: 8356790 [PubMed - indexed for MEDLINE]

11:

Divergent genetic evolution of hemagglutinin in influenza A H1N1 and A H1N2 subtypes isolated in the south-France since the winter of 2001-2002.

Al Faress S, Cartet G, Ferraris O, Norder H, Valette M, Lina B.

J Clin Virol. 2005 Jul;33(3):230-6. Epub 2005 Jan 19.

PMID: 15911445 [PubMed - indexed for MEDLINE]

12:

Positive Darwinian evolution in human influenza A viruses.

Fitch WM, Leiter JM, Li XQ, Palese P.

Proc Natl Acad Sci U S A. 1991 May 15;88(10):4270-4.

PMID: 1840695 [PubMed - indexed for MEDLINE]

14:

[Accumulation of amino acid substitutions promotes irreversible structural changes in the hemagglutinin of human influenza AH3 virus during evolution]

Nakajima K, Nobusawa E, Nakajima S.

Uirusu. 2006 Jun;56(1):91-8. Review. Japanese.

PMID: 17038817 [PubMed - indexed for MEDLINE]

15:

A method for detecting positive selection at single amino acid sites.

Suzuki Y, Gojobori T.

Mol Biol Evol. 1999 Oct;16(10):1315-28.

PMID: 10563013 [PubMed - indexed for MEDLINE]

16:

Diverged evolution of recent equine-2 influenza (H3N8) viruses in the Western Hemisphere.

Lai AC, Chambers TM, Holland RE Jr, Morley PS, Haines DM, Townsend HG, Barrandeguy M.

Arch Virol. 2001;146(6):1063-74.

PMID: 11504416 [PubMed - indexed for MEDLINE]

17:

Networks of genomic co-occurrence capture characteristics of human influenza A (H3N2) evolution.

Du X, Wang Z, Wu A, Song L, Cao Y, Hang H, Jiang T.

Genome Res. 2008 Jan;18(1):178-87. Epub 2007 Nov 21.

PMID: 18032723 [PubMed - indexed for MEDLINE]

18:

A likelihood-based index of protein protein binding affinities with application to influenza HA escape from antibodies.

Watabe T, Kishino H, de Oliveira Martins L, Kitazoe Y.

Mol Biol Evol. 2007 Aug;24(8):1627-38. Epub 2007 May 2.

PMID: 17478433 [PubMed - indexed for MEDLINE]

19:

Primary structure of the gene coding for the haemagglutinin of influenza virus A/Leningrad/385/80(H3N2): detection of a point mutation responsible for the antigenic drift.

Migunova BV, Plusnin AZ, Petrov NA, Rivkin MI, Grinbaum EB, Obuchova LV, Kuznetzov OK.

Acta Virol. 1990 May;34(3):209-19.

PMID: 1980394 [PubMed - indexed for MEDLINE]

20:

Genetic and antigenic analyses of influenza A (H1N1) viruses, 1986-1991.

Xu X, Rocha EP, Regenery HL, Kendal AP, Cox NJ.

Virus Res. 1993 Apr;28(1):37-55.

PMID: 8493812 [PubMed - indexed for MEDLINE]

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