C1 SCOP superfamily (domain 1) C1 name SCOP superfamily name (domain 1) C2 SCOP superfamily (domain 2) C2 name SCOP superfamily name (domain 3) NoPro number of multidomain proteins with both C1 and C2 DMav average log[10] of the ratios of evolutionary rates of C1 and C2 in multidomain proteins DMsd standard deviation of the above N1 number C1 domains in genome N2 number C2 domains in genome DAav average log[10] of the ratios of evolutionary rates of all (N1*N2) possible combinations of C1 and C2 domains DAsd standard deviation of the above C1 C1 name C2 C2 name NoPro DMav DMsd N1 N2 DAav DAsd a.1.2 alpha-helical ferredoxin d.15.4 2Fe-2S ferredoxin-like 1 0.2003 0 1 13 -0.4882 0.7176 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like c.14.1 ClpP/crotonase 2 1.128 0.0903 16 23 -0.3223 0.817 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like c.2.1 NAD(P)-binding Rossmann-fold domains 15 0.2168 0.488 16 167 -0.4337 0.8435 a.102.4 Terpenoid cyclases/Protein prenyltransferases a.128.1 Terpenoid synthases 4 -0.005 0.0992 9 11 0.373 1.1048 a.113.1 DNA repair protein MutS, domain III c.37.1 P-loop containing nucleoside triphosphate hydrolases 2 0.1383 0.1947 2 458 1.1029 0.9511 a.118.1 ARM repeat b.1.10 Clathrin adaptor appendage domain 6 0.0431 0.2837 47 7 -0.4184 0.7216 a.118.1 ARM repeat b.69.6 Clathrin heavy-chain terminal domain 2 -0.0675 0.4431 47 1 0.6692 0.693 a.118.1 ARM repeat d.105.1 Subdomain of clathrin and coatomer appendage domain 5 0.041 0.4436 47 6 -0.5775 0.7307 a.118.17 Cullin repeat-like a.4.5 Winged helix DNA-binding domain 4 -0.1776 0.4878 4 44 0.3102 0.7005 a.118.17 Cullin repeat-like e.40.1 Cullin homology domain 4 -0.1074 0.3278 4 5 0.6077 0.3219 a.118.19 C-terminal domain of Ku80 b.131.1 SPOC domain-like 1 -0.0246 0 1 2 0.5828 0.0456 a.118.8 TPR-like a.2.3 Chaperone J-domain 2 0.0202 0.0082 44 57 0.538 0.8536 a.118.8 TPR-like b.15.1 HSP20-like chaperones 3 0.1932 0.3273 44 20 -0.1506 0.8019 a.118.8 TPR-like b.62.1 Cyclophilin-like 1 0.08 0 44 26 0.5629 0.8326 a.118.8 TPR-like c.117.1 Amidase signature (AS) enzymes 2 -0.0863 0.2093 44 7 -0.0262 0.7684 a.118.8 TPR-like c.47.1 Thioredoxin-like 2 0.1489 0.5644 44 85 0.2963 0.8881 a.118.8 TPR-like d.159.1 Metallo-dependent phosphatases 1 -0.2475 0 44 26 1.1432 1.0445 a.118.8 TPR-like d.211.1 Ankyrin repeat 1 -0.315 0 44 31 -0.0551 0.9121 a.118.8 TPR-like d.26.1 FKBP-like 3 -0.1324 0.7425 44 19 0.616 0.8177 a.118.8 TPR-like g.44.1 RING/U-box 1 -0.0208 0 44 100 0.366 0.9385 a.118.9 ENTH/VHS domain a.7.8 GAT-like domain 4 -0.0685 0.3359 18 5 -0.0346 0.8224 a.119.1 Lipoxigenase b.12.1 Lipase/lipooxygenase domain (PLAT/LH2 domain) 4 -0.2721 0.1203 5 4 -0.4037 0.7037 a.129.1 GroEL equatorial domain-like c.8.5 GroEL apical domain-like 3 0.0141 0.1281 4 14 -0.3158 0.7706 a.14.1 VHP, Villin headpiece domain d.109.1 Actin depolymerizing proteins 1 -1.6398 0 1 8 0.7222 0.4397 a.144.1 PABC (PABP) domain d.58.7 RNA-binding domain, RBD 2 0.0061 0.4287 2 138 -0.2652 0.7293 a.149.1 RNase III domain-like c.37.1 P-loop containing nucleoside triphosphate hydrolases 2 0.1141 0.3288 5 458 1.1229 1.1375 a.157.1 Skp1 dimerisation domain-like d.42.1 POZ domain 1 -0.546 0 2 3 -0.6804 0.3504 a.159.2 FF domain b.72.1 WW domain 1 -0.0317 0 1 1 -0.2039 0 a.160.1 PAP/OAS1 substrate-binding domain d.218.1 Nucleotidyltransferase 2 -0.042 0.0873 3 6 -0.0322 0.8531 a.162.1 Pre-protein crosslinking domain of SecA a.172.1 Helical scaffold and wing domains of SecA 1 0.0594 0 2 1 -0.5568 0.7169 a.166.1 RuBisCo LSMT C-terminal, substrate-binding domain b.85.7 SET domain 1 -0.0319 0 1 16 -0.3042 0.4917 a.169.1 BEACH domain b.55.1 PH domain-like 1 0.4392 0 2 11 0.6457 1.1192 a.174.1 Double Clp-N motif c.37.1 P-loop containing nucleoside triphosphate hydrolases 4 -0.0545 1.4704 4 458 0.0741 1.6869 a.177.1 Sigma2 domain of RNA polymerase sigma factors a.4.13 Sigma3 and sigma4 domains of RNA polymerase sigma factors 2 -0.0764 0.5006 2 5 0.0658 0.8138 a.182.1 GatB/YqeY motif d.128.1 Glutamine synthetase/guanido kinase 1 -0.0704 0 1 1 0.2979 0 a.187.1 HAND domain of the nucleosome remodeling ATPase ISWI a.4.1 Homeodomain-like 2 0.013 0.1503 1 148 0.1798 0.9743 a.187.1 HAND domain of the nucleosome remodeling ATPase ISWI c.37.1 P-loop containing nucleoside triphosphate hydrolases 1 -2.1583 0 1 458 -0.1189 0.9398 a.189.1 XPC-binding domain a.5.2 UBA-like 2 -1.2886 0.3802 2 7 -0.8136 0.9898 a.189.1 XPC-binding domain d.15.1 Ubiquitin-like 2 0.0075 0.2207 2 42 0.3789 2.3778 a.192.1 N-terminal domain of adenylylcyclase associated protein, CAP b.80.5 C-terminal domain of adenylylcyclase associated protein 1 0.0388 0 1 1 0.2681 0 a.2.11 Fe,Mn superoxide dismutase (SOD), N-terminal domain d.44.1 Fe,Mn superoxide dismutase (SOD), C-terminal domain 3 -0.0828 0.2707 3 3 -0.0195 0.3921 a.2.17 Endosomal sorting complex assembly domain a.24.28 VPS28 C-terminal domain-like 2 -0.1799 0.2137 2 2 1.1752 0 a.2.3 Chaperone J-domain b.4.1 HSP40/DnaJ peptide-binding domain 8 -0.2055 0.4501 57 9 -0.2113 0.7913 a.2.3 Chaperone J-domain d.58.1 4Fe-4S ferredoxins 1 -0.2038 0 57 5 1.3351 1.2226 a.2.3 Chaperone J-domain g.54.1 DnaJ/Hsp40 cysteine-rich domain 7 -0.1 0.2301 57 7 0.0363 0.8356 a.2.7 tRNA-binding arm d.104.1 Class II aaRS and biotin synthetases 1 -0.4069 0 1 24 0.4467 0.6176 a.203.1 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) d.104.1 Class II aaRS and biotin synthetases 2 0.1235 0.1747 2 24 0.7153 0.611 a.203.1 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) d.67.1 ThrRS/AlaRS common domain 1 0.2846 0 2 2 0.8138 0.4413 a.208.1 Citrobacter dihydroxyacetone kinase extra ATP-binding domain c.119.1 DAK1/DegV-like 1 -0.2675 0 1 1 0.8325 0 a.21.1 HMG-box b.55.1 PH domain-like 1 0.3415 0 10 11 0.277 0.9808 a.235.1 ATP-dependent DNA ligase DNA-binding domain b.40.4 Nucleic acid-binding proteins 1 0.0952 0 1 47 0.172 0.8734 a.235.1 ATP-dependent DNA ligase DNA-binding domain d.142.2 DNA ligase/mRNA capping enzyme, catalytic domain 1 0.3866 0 1 3 0.1788 0.1568 a.238.1 BAR/IMD domain-like g.45.1 ArfGap/RecO-like zinc finger 1 0.2877 0 1 9 -0.4778 0.5926 a.24.13 Domain of the SRP/SRP receptor G-proteins a.36.1 Signal peptide-binding domain 2 0.2868 0.4819 2 2 -0.267 0.4147 a.24.13 Domain of the SRP/SRP receptor G-proteins c.37.1 P-loop containing nucleoside triphosphate hydrolases 2 0.3962 0.3395 2 458 -0.102 0.9945 a.242.1 Dcp2 domain-like d.113.1 Nudix 1 -0.1001 0 1 7 -0.6665 0.4299 a.245.1 EB1 dimerisation domain-like a.40.1 Calponin-homology domain, CH-domain 2 -0.3103 0.5998 2 6 0.9458 0.641 a.269.1 FtsH protease domain-like c.37.1 P-loop containing nucleoside triphosphate hydrolases 10 0.0705 0.2335 10 458 -0.023 1.019 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases b.40.4 Nucleic acid-binding proteins 1 -0.2642 0 9 47 0.206 0.9579 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases b.51.1 ValRS/IleRS/LeuRS editing domain 5 -0.0529 0.1964 9 5 0.1294 0.5283 a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases c.26.1 Nucleotidylyl transferase 4 -0.0574 0.2014 9 18 0.6572 0.6819 a.29.12 Nqo1C-terminal domain-like c.142.1 Nqo1 FMN-binding domain-like 1 0.1397 0 1 1 -1.0569 0 a.29.12 Nqo1C-terminal domain-like d.15.13 Nqo1 middle domain-like 1 0.264 0 1 1 -1.3757 0 a.29.2 Bromodomain d.108.1 Acyl-CoA N-acyltransferases (Nat) 1 0.1384 0 9 9 0.4269 0.916 a.29.3 Acyl-CoA dehydrogenase C-terminal domain-like e.6.1 Acyl-CoA dehydrogenase NM domain-like 5 -0.0433 0.4133 6 5 -0.4294 0.3898 a.29.5 alpha-ketoacid dehydrogenase kinase, N-terminal domain d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1 0.0515 0 1 15 -0.1508 0.6259 a.32.1 Transcription factor IIA (TFIIA), alpha-helical domain b.56.1 Transcription factor IIA (TFIIA), beta-barrel domain 2 -0.5692 0.079 2 5 -0.1573 0.23 a.36.1 Signal peptide-binding domain c.37.1 P-loop containing nucleoside triphosphate hydrolases 2 0.1094 0.8214 2 458 0.1651 0.9512 a.39.1 EF-hand d.144.1 Protein kinase-like (PK-like) 18 -0.0042 0.2113 62 502 0.1969 1.1236 a.39.1 EF-hand f.42.1 Mitochondrial carrier 1 0.3268 0 62 38 0.1852 1.0361 a.4.1 Homeodomain-like c.23.1 CheY-like 4 0.0771 0.6412 148 24 -0.969 1.1406 a.4.1 Homeodomain-like c.37.1 P-loop containing nucleoside triphosphate hydrolases 2 -2.1713 0.1503 148 458 -0.2988 1.3506 a.4.5 Winged helix DNA-binding domain c.66.1 S-adenosyl-L-methionine-dependent methyltransferases 2 0.2485 0.3685 44 56 -0.5373 0.9254 a.4.5 Winged helix DNA-binding domain e.40.1 Cullin homology domain 5 0.1306 0.4169 44 5 0.2975 0.7674 a.4.5 Winged helix DNA-binding domain e.63.1 E2F-DP heterodimerization region 4 -0.0627 0.1196 44 4 -0.6979 0.8251 a.4.7 Ribosomal protein L11, C-terminal domain d.47.1 Ribosomal L11/L12e N-terminal domain 2 -0.2183 0.843 2 3 1.588 0.6991 a.41.1 Domain of poly(ADP-ribose) polymerase d.166.1 ADP-ribosylation 2 -0.1268 0.1687 2 3 0.0267 0.3473 a.41.1 Domain of poly(ADP-ribose) polymerase d.297.1 WGR domain-like 2 -0.1724 0.0775 2 3 -0.3459 0.4943 a.41.1 Domain of poly(ADP-ribose) polymerase g.39.1 Glucocorticoid receptor-like (DNA-binding domain) 1 -0.3289 0 2 10 0.3386 0.7506 a.45.1 Glutathione S-transferase (GST), C-terminal domain c.47.1 Thioredoxin-like 9 -0.1745 0.2765 12 85 0.7364 0.8312 a.46.2 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain c.27.1 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 1 -0.2368 0 1 1 0.5819 0 a.48.2 Transferrin receptor-like dimerisation domain c.8.4 PA domain 2 -0.0823 0.0127 2 2 0.2091 0.2192 a.5.2 UBA-like b.40.4 Nucleic acid-binding proteins 1 -0.6938 0 7 47 -0.1842 0.9033 a.5.2 UBA-like d.15.1 Ubiquitin-like 3 0.841 0.7964 7 42 1.1925 2.1971 a.5.2 UBA-like d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain 2 -0.1123 0.0016 7 2 0.0021 0.4362 a.56.1 CO dehydrogenase ISP C-domain like d.133.1 Molybdenum cofactor-binding domain 2 -0.1403 0.4031 2 2 -0.4396 0.5338 a.56.1 CO dehydrogenase ISP C-domain like d.145.1 FAD-binding domain 2 -0.0756 0.4742 2 9 -0.487 0.5704 a.56.1 CO dehydrogenase ISP C-domain like d.15.4 2Fe-2S ferredoxin-like 2 -0.0661 0.6786 2 13 0.2228 0.7128 a.56.1 CO dehydrogenase ISP C-domain like d.41.1 CO dehydrogenase molybdoprotein N-domain-like 2 -0.0433 0.5188 2 2 -1.1002 0.3442 a.56.1 CO dehydrogenase ISP C-domain like d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like 1 0.2373 0 2 1 -0.3751 0.163 a.60.12 DNA polymerase beta-like, second domain a.60.6 DNA polymerase beta, N-terminal domain-like 1 -0.1179 0 1 1 -1.0013 0 a.60.12 DNA polymerase beta-like, second domain d.218.1 Nucleotidyltransferase 1 -0.4152 0 1 6 -1.7715 0.5747 a.60.14 eIF2alpha middle domain-like b.40.4 Nucleic acid-binding proteins 1 -0.1987 0 1 47 -0.7073 0.8734 a.60.14 eIF2alpha middle domain-like d.58.51 eIF-2-alpha, C-terminal domain 1 -0.0902 0 1 1 -0.6211 0 a.60.2 RuvA domain 2-like c.52.1 Restriction endonuclease-like 1 0.0325 0 1 1 -0.0005 0 a.60.4 Rad51 N-terminal domain-like c.37.1 P-loop containing nucleoside triphosphate hydrolases 2 -0.0802 0.3186 2 458 0.096 0.9632 a.60.6 DNA polymerase beta, N-terminal domain-like d.218.1 Nucleotidyltransferase 1 -0.2974 0 1 6 -0.7702 0.5747 a.60.7 5' to 3' exonuclease, C-terminal subdomain c.120.1 PIN domain-like 1 0.364 0 1 6 -0.8164 0.803 a.60.8 HRDC-like c.37.1 P-loop containing nucleoside triphosphate hydrolases 1 1.291 0 3 458 0.2899 1.1088 a.60.8 HRDC-like c.55.3 Ribonuclease H-like 1 0.0818 0 3 22 -0.8438 0.8691 a.66.1 Transducin (alpha subunit), insertion domain c.37.1 P-loop containing nucleoside triphosphate hydrolases 1 -0.6929 0 1 458 0.6367 0.9398 a.69.1 C-terminal domain of alpha and beta subunits of F1 ATP synthase b.49.1 N-terminal domain of alpha and beta subunits of F1 ATP synthase 2 -0.0679 0.0218 3 2 -0.818 0.336 a.69.1 C-terminal domain of alpha and beta subunits of F1 ATP synthase c.37.1 P-loop containing nucleoside triphosphate hydrolases 3 0.0541 0.26 3 458 -0.1588 0.988 a.69.3 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain c.2.1 NAD(P)-binding Rossmann-fold domains 1 0.0808 0 1 167 -1.2952 0.6257 a.69.3 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1 -0.0132 0 1 20 -0.9032 0.991 a.7.14 MIT domain c.37.1 P-loop containing nucleoside triphosphate hydrolases 1 0.2592 0 1 458 -0.8132 0.9398 a.7.3 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain c.3.1 FAD/NAD(P)-binding domain 1 0.3306 0 1 26 -0.5669 0.6611 a.71.1 ERP29 C domain-like c.47.1 Thioredoxin-like 1 -0.1786 0 1 85 0.4153 0.6007 a.71.2 Helical domain of Sec23/24 c.62.1 vWA-like 3 0.1775 0.0484 3 7 -0.2693 0.4257 a.71.2 Helical domain of Sec23/24 d.109.2 C-terminal, gelsolin-like domain of Sec23/24 3 0.1391 0.2121 3 3 -0.0992 0.758 a.71.2 Helical domain of Sec23/24 g.41.10 Zn-finger domain of Sec23/24 3 0.232 0.1764 3 5 -0.2927 0.6961 a.8.3 Families 57/38 glycoside transferase middle domain c.6.2 Glycoside hydrolase/deacetylase 1 -0.0201 0 1 1 0.0588 0 a.8.4 Heat shock protein 70kD (HSP70), C-terminal subdomain b.130.1 Heat shock protein 70kD (HSP70), peptide-binding domain 3 0.6634 0.1489 3 7 0.584 0.8546 a.8.4 Heat shock protein 70kD (HSP70), C-terminal subdomain c.55.1 Actin-like ATPase domain 3 -1.4327 1.7312 3 25 -0.032 1.0278 a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain c.37.1 P-loop containing nucleoside triphosphate hydrolases 4 -0.0413 0.277 4 458 0.4887 1.0901 a.9.1 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex b.84.1 Single hybrid motif 2 -0.2451 0.0349 2 12 1.3102 0.5054 a.9.1 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex c.43.1 CoA-dependent acyltransferases 2 -0.1375 0.0636 2 7 1.4588 0.6397 a.92.1 Carbamoyl phosphate synthetase, large subunit connection domain c.24.1 Methylglyoxal synthase-like 1 -0.1366 0 1 2 -0.1027 0.3268 a.92.1 Carbamoyl phosphate synthetase, large subunit connection domain c.30.1 PreATP-grasp domain 1 -1.7151 0 1 7 0.2942 0.636 a.92.1 Carbamoyl phosphate synthetase, large subunit connection domain d.142.1 Glutathione synthetase ATP-binding domain-like 1 0.1392 0 1 9 0.5393 0.4174 a.96.1 DNA-glycosylase d.129.1 TATA-box binding protein-like 1 0.1317 0 10 3 0.7706 1.3072 a.99.1 Cryptochrome/photolyase FAD-binding domain c.28.1 Cryptochrome/photolyase, N-terminal domain 5 -0.1128 0.2075 5 7 -0.6516 1.0916 b.1.10 Clathrin adaptor appendage domain d.105.1 Subdomain of clathrin and coatomer appendage domain 6 -0.0003 0.4034 7 6 -0.1591 0.3375 b.1.12 Purple acid phosphatase, N-terminal domain d.159.1 Metallo-dependent phosphatases 4 0.0102 0.1928 4 26 1.0774 0.8189 b.1.18 E set domains b.43.4 Riboflavin synthase domain-like 2 -0.1533 0.232 9 10 0.1973 0.7119 b.1.18 E set domains c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain 2 -0.0062 0.1262 9 9 0.2834 0.7177 b.1.18 E set domains d.120.1 Cytochrome b5-like heme/steroid binding domain 2 0.089 0.2606 9 11 0.2239 0.706 b.1.18 E set domains d.176.1 Oxidoreductase molybdopterin-binding domain 3 -0.0394 0.087 9 3 0.3262 0.4989 b.1.8 Cu,Zn superoxide dismutase-like d.58.17 HMA, heavy metal-associated domain 1 0.4286 0 4 5 0.1538 0.6255 b.103.1 MoeA N-terminal region -like c.57.1 Molybdenum cofactor biosynthesis proteins 2 -0.0454 0.3138 1 2 0.0467 0.6169 b.104.1 P-domain of calnexin/calreticulin b.29.1 Concanavalin A-like lectins/glucanases 3 -0.0187 0.4122 4 26 -0.8014 0.6254 b.117.1 Obg GTP-binding protein N-terminal domain c.37.1 P-loop containing nucleoside triphosphate hydrolases 1 0.0962 0 1 458 0.4098 0.9398 b.122.1 PUA domain-like c.26.1 Nucleotidylyl transferase 3 0.2182 0.1571 6 18 0.3358 0.7834 b.122.1 PUA domain-like d.265.1 Pseudouridine synthase 1 -0.2015 0 6 7 -0.1251 0.9016 b.130.1 Heat shock protein 70kD (HSP70), peptide-binding domain c.55.1 Actin-like ATPase domain 7 -0.7552 1.6427 7 25 -0.616 1.2903 b.131.1 SPOC domain-like c.62.1 vWA-like 1 -0.2694 0 2 7 0.566 0.3801 b.142.1 DNA-binding pseudobarrel domain d.10.1 DNA-binding domain 1 -0.1859 0 24 61 -0.0339 1.3491 b.18.1 Galactose-binding domain-like b.30.5 Galactose mutarotase-like 1 0.3412 0 4 8 -0.6714 0.5813 b.18.1 Galactose-binding domain-like c.1.8 (Trans)glycosidases 1 0.1518 0 4 100 -0.5744 0.6318 b.2.7 Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor d.110.4 SNARE-like 4 0.0345 0.4324 4 14 0.1444 1.0527 b.26.1 SMAD/FHA domain d.219.1 PP2C-like 1 -0.1552 0 2 24 0.6403 0.5792 b.29.1 Concanavalin A-like lectins/glucanases d.144.1 Protein kinase-like (PK-like) 8 0.0166 0.1455 26 502 0.5478 0.8897 b.30.2 Amine oxidase catalytic domain d.17.2 Amine oxidase N-terminal region 4 -0.3847 0.2638 5 4 -0.3486 0.9828 b.30.5 Galactose mutarotase-like c.1.8 (Trans)glycosidases 1 -0.1894 0 8 100 0.0971 0.5765 b.34.10 Cap-Gly domain d.15.1 Ubiquitin-like 1 -0.4172 0 1 42 1.3775 2.2045 b.34.13 Chromo domain-like d.108.1 Acyl-CoA N-acyltransferases (Nat) 2 -0.0856 0.3254 4 9 -0.1231 1.0833 b.34.5 Translation proteins SH3-like domain b.40.4 Nucleic acid-binding proteins 3 -0.3561 0.6907 12 47 -0.4346 1.113 b.34.8 Fumarylacetoacetate hydrolase, FAH, N-terminal domain d.177.1 FAH 1 0.2387 0 1 2 0.8216 0.1188 b.35.1 GroES-like c.2.1 NAD(P)-binding Rossmann-fold domains 5 -0.0279 0.1963 10 167 -0.1132 0.7127 b.4.1 HSP40/DnaJ peptide-binding domain g.54.1 DnaJ/Hsp40 cysteine-rich domain 3 -0.2038 0.2762 9 7 0.2476 0.8603 b.40.4 Nucleic acid-binding proteins c.26.1 Nucleotidylyl transferase 1 0.1958 0 47 18 0.4511 1.0203 b.40.4 Nucleic acid-binding proteins d.101.1 Ribonuclease PH domain 2-like 2 -0.1608 0.2261 47 2 0.1453 0.8883 b.40.4 Nucleic acid-binding proteins d.104.1 Class II aaRS and biotin synthetases 3 -0.0347 0.0141 47 24 0.223 1.055 b.40.4 Nucleic acid-binding proteins d.14.1 Ribosomal protein S5 domain 2-like 2 -1.1021 0.2353 47 40 0.4841 1.0812 b.40.4 Nucleic acid-binding proteins d.142.2 DNA ligase/mRNA capping enzyme, catalytic domain 2 0.1656 0.1778 47 3 0.0068 0.8766 b.40.4 Nucleic acid-binding proteins d.230.1 N-terminal, heterodimerisation domain of RBP7 (RpoE) 1 0.0647 0 47 3 -0.0223 1.4213 b.40.4 Nucleic acid-binding proteins d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain 1 0.5825 0 47 2 0.1863 0.9303 b.40.4 Nucleic acid-binding proteins d.58.51 eIF-2-alpha, C-terminal domain 1 0.1085 0 47 1 0.0861 0.8734 b.40.4 Nucleic acid-binding proteins d.74.4 GAD domain 1 0.0817 0 47 1 -0.2602 0.8734 b.40.4 Nucleic acid-binding proteins g.40.1 Retrovirus zinc finger-like domains 1 -0.152 0 47 4 -0.457 1.4611 b.43.3 Translation proteins b.44.1 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 11 0.0674 0.7138 24 11 0.3124 0.879 b.43.3 Translation proteins c.20.1 Initiation factor IF2/eIF5b, domain 3 1 -0.8298 0 24 1 -0.0648 0.6146 b.43.3 Translation proteins c.37.1 P-loop containing nucleoside triphosphate hydrolases 19 -0.0656 0.4979 24 458 -0.0069 1.1151 b.43.3 Translation proteins d.14.1 Ribosomal protein S5 domain 2-like 4 0.1599 0.1708 24 40 -0.0985 0.8858 b.43.3 Translation proteins d.58.11 EF-G C-terminal domain-like 5 0.3547 1.6356 24 6 0.8194 0.9072 b.43.4 Riboflavin synthase domain-like c.23.5 Flavoproteins 3 -0.1591 0.1859 10 9 -0.0542 0.6977 b.43.4 Riboflavin synthase domain-like c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain 9 0.0805 0.2765 10 9 0.0861 0.7363 b.43.4 Riboflavin synthase domain-like d.120.1 Cytochrome b5-like heme/steroid binding domain 2 0.2423 0.0286 10 11 0.0266 0.725 b.43.4 Riboflavin synthase domain-like d.176.1 Oxidoreductase molybdopterin-binding domain 2 0.0903 0.1233 10 3 0.1289 0.5257 b.43.5 Riboflavin kinase-like c.108.1 HAD-like 1 0.3883 0 1 62 0.2786 0.6275 b.44.1 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain c.37.1 P-loop containing nucleoside triphosphate hydrolases 11 -0.1647 0.3337 11 458 -0.3194 1.1355 b.45.1 FMN-binding split barrel c.104.1 YjeF N-terminal domain-like 1 0.0014 0 3 1 0.2384 0.4258 b.49.1 N-terminal domain of alpha and beta subunits of F1 ATP synthase c.37.1 P-loop containing nucleoside triphosphate hydrolases 2 0.2606 0.1628 2 458 0.6591 0.9393 b.49.2 Alanine racemase C-terminal domain-like c.1.6 PLP-binding barrel 1 0.1334 0 1 4 -0.1617 0.1737 b.52.1 Barwin-like endoglucanases b.7.3 PHL pollen allergen 5 0.1063 0.4679 18 6 -1.0301 0.853 b.52.1 Barwin-like endoglucanases g.3.1 Plant lectins/antimicrobial peptides 1 0.1763 0 18 3 -0.7375 0.7882 b.52.2 ADC-like c.37.1 P-loop containing nucleoside triphosphate hydrolases 1 0.7197 0 1 458 -0.9264 0.9398 b.52.2 ADC-like d.31.1 Cdc48 domain 2-like 1 0.38 0 1 1 -0.6523 0 b.53.1 Ribosomal protein L25-like c.26.1 Nucleotidylyl transferase 2 0.0474 0.0136 2 18 0.6954 0.5565 b.55.1 PH domain-like b.69.5 RCC1/BLIP-II 2 0.1385 0.4895 11 18 -0.197 0.9659 b.55.1 PH domain-like g.50.1 FYVE/PHD zinc finger 2 0.4259 0.4256 11 26 0.2277 1.4188 b.58.1 PK beta-barrel domain-like c.49.1 PK C-terminal domain-like 2 -0.0533 0.5713 3 3 0.1 0.413 b.62.1 Cyclophilin-like d.58.7 RNA-binding domain, RBD 1 0.1843 0 26 138 -0.1237 0.7872 b.68.10 GyrA/ParC C-terminal domain-like e.11.1 Type II DNA topoisomerase 1 0.1394 0 1 2 -0.0481 0.4714 b.69.5 RCC1/BLIP-II g.50.1 FYVE/PHD zinc finger 4 0.054 0.2741 18 26 0.4246 1.259 b.69.7 Peptidase/esterase 'gauge' domain c.69.1 alpha/beta-Hydrolases 1 -0.3006 0 1 58 -0.0724 0.4972 b.7.1 C2 domain (Calcium/lipid-binding domain, CaLB) c.1.18 PLC-like phosphodiesterases 1 -0.1167 0 17 6 -0.1626 0.5484 b.71.1 Glycosyl hydrolase domain c.1.8 (Trans)glycosidases 6 -0.1177 0.3805 6 100 0.4502 0.5505 b.80.4 Alpha subunit of glutamate synthase, C-terminal domain c.1.4 FMN-linked oxidoreductases 2 -0.0376 0.1196 2 11 -0.1222 0.5637 b.80.4 Alpha subunit of glutamate synthase, C-terminal domain d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 -0.159 0.0015 2 24 0.2273 0.4295 b.81.1 Trimeric LpxA-like enzymes c.68.1 Nucleotide-diphospho-sugar transferases 6 0.1146 0.171 12 29 -0.0816 0.8469 b.82.3 cAMP-binding domain-like d.211.1 Ankyrin repeat 1 -0.058 0 15 31 -1.057 0.9244 b.82.7 Calcium ATPase, transduction domain A c.108.1 HAD-like 15 -0.046 0.4302 15 62 -0.285 0.8027 b.82.7 Calcium ATPase, transduction domain A d.220.1 Metal cation-transporting ATPase, ATP-binding domain N 3 0.1836 0.1696 15 5 -1.0626 0.5364 b.84.1 Single hybrid motif b.84.2 Rudiment single hybrid motif 1 0.7075 0 12 4 0.9437 1.4168 b.84.1 Single hybrid motif c.30.1 PreATP-grasp domain 1 0.4129 0 12 7 0.1714 0.7737 b.84.1 Single hybrid motif c.43.1 CoA-dependent acyltransferases 7 0.0143 0.3229 12 7 0.1486 0.7952 b.84.1 Single hybrid motif d.142.1 Glutathione synthetase ATP-binding domain-like 1 0.4583 0 12 9 0.4165 0.6351 b.84.2 Rudiment single hybrid motif c.14.1 ClpP/crotonase 1 -0.2904 0 4 23 -0.9793 1.4446 b.84.2 Rudiment single hybrid motif c.30.1 PreATP-grasp domain 4 -0.0747 0.2351 4 7 -0.7723 1.4642 b.84.2 Rudiment single hybrid motif d.142.1 Glutathione synthetase ATP-binding domain-like 4 -0.1044 0.1209 4 9 -0.5272 1.389 b.85.3 Urease, beta-subunit b.92.1 Composite domain of metallo-dependent hydrolases 1 -0.0646 0 1 1 0.1551 0 b.85.3 Urease, beta-subunit c.1.9 Metallo-dependent hydrolases 1 -0.1248 0 1 10 0.6236 0.4538 b.85.3 Urease, beta-subunit d.8.1 Urease, gamma-subunit 1 -0.6418 0 1 1 0.5973 0 b.92.1 Composite domain of metallo-dependent hydrolases c.1.9 Metallo-dependent hydrolases 1 -0.0602 0 1 10 0.4685 0.4538 b.92.1 Composite domain of metallo-dependent hydrolases d.8.1 Urease, gamma-subunit 1 -0.5772 0 1 1 0.4422 0 b.98.1 Leukotriene A4 hydrolase N-terminal domain d.92.1 Metalloproteases ("zincins"), catalytic domain 1 -0.1217 0 1 8 1.0406 0.6773 c.1.10 Aldolase c.2.1 NAD(P)-binding Rossmann-fold domains 1 -0.4154 0 17 167 -0.5492 0.7659 c.1.10 Aldolase c.58.1 Aminoacid dehydrogenase-like, N-terminal domain 1 -0.4103 0 17 11 -0.091 0.815 c.1.11 Enolase C-terminal domain-like d.54.1 Enolase N-terminal domain-like 4 -0.0112 0.1035 4 4 -0.0892 0.7612 c.1.12 Phosphoenolpyruvate/pyruvate domain c.8.1 Phosphohistidine domain 2 0.105 0.1288 12 2 -0.6536 0.3761 c.1.12 Phosphoenolpyruvate/pyruvate domain d.142.1 Glutathione synthetase ATP-binding domain-like 2 0.0753 0.075 12 9 0.2134 0.5414 c.1.17 Nicotinate/Quinolinate PRTase C-terminal domain-like d.41.2 Nicotinate/Quinolinate PRTase N-terminal domain-like 2 -0.1107 0.147 2 2 -0.4675 0.1528 c.1.2 Ribulose-phoshate binding barrel c.23.16 Class I glutamine amidotransferase-like 1 -0.2295 0 15 14 -0.3506 0.694 c.1.2 Ribulose-phoshate binding barrel c.61.1 PRTase-like 1 -0.1988 0 15 15 0.2874 0.8129 c.1.21 Dihydropteroate synthetase-like d.58.30 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK 1 -0.3475 0 1 1 0.0107 0 c.1.3 Thiamin phosphate synthase c.72.1 Ribokinase-like 1 0.0601 0 2 18 0.7132 0.4923 c.1.4 FMN-linked oxidoreductases d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 2 -0.1214 0.1181 11 24 0.3496 0.6804 c.1.8 (Trans)glycosidases c.23.11 Beta-D-glucan exohydrolase, C-terminal domain 5 -0.0169 0.0721 100 5 0.0601 0.5319 c.1.8 (Trans)glycosidases d.92.2 beta-N-acetylhexosaminidase-like domain 2 -0.3126 0.2345 100 2 -0.5233 0.7305 c.1.9 Metallo-dependent hydrolases d.8.1 Urease, gamma-subunit 1 -0.517 0 10 1 -0.0263 0.4538 c.10.2 L domain-like d.144.1 Protein kinase-like (PK-like) 67 0.0299 0.1912 104 502 0.895 0.8326 c.108.1 HAD-like c.47.1 Thioredoxin-like 1 -0.1231 0 62 85 -0.4245 0.8626 c.108.1 HAD-like c.87.1 UDP-Glycosyltransferase/glycogen phosphorylase 3 0.119 0.1085 62 22 -0.1261 0.8016 c.108.1 HAD-like d.220.1 Metal cation-transporting ATPase, ATP-binding domain N 5 -0.0008 0.2237 62 5 -0.7776 0.6452 c.108.1 HAD-like d.58.17 HMA, heavy metal-associated domain 2 -0.7021 0.9675 62 5 -0.05 0.7523 c.109.1 PEP carboxykinase N-terminal domain c.91.1 PEP carboxykinase-like 1 -0.2869 0 1 1 -0.7449 0 c.124.1 NagB/RpiA/CoA transferase-like d.58.40 D-ribose-5-phosphate isomerase (RpiA), lid domain 1 -0.2834 0 8 1 -1.0823 0.4691 c.14.1 ClpP/crotonase c.2.1 NAD(P)-binding Rossmann-fold domains 2 0.1505 0.1336 23 167 -0.1114 0.8562 c.14.1 ClpP/crotonase c.30.1 PreATP-grasp domain 1 0.4947 0 23 7 0.207 0.8334 c.14.1 ClpP/crotonase d.142.1 Glutathione synthetase ATP-binding domain-like 1 0.1721 0 23 9 0.4521 0.7077 c.142.1 Nqo1 FMN-binding domain-like d.15.13 Nqo1 middle domain-like 1 0.1243 0 1 1 -0.3188 0 c.144.1 RibA-like d.115.1 YrdC/RibB 2 0.2288 0.5757 2 4 -0.6699 0.3253 c.2.1 NAD(P)-binding Rossmann-fold domains c.23.12 Formate/glycerate dehydrogenase catalytic domain-like 3 -0.0975 0.398 167 3 0.3894 0.6258 c.2.1 NAD(P)-binding Rossmann-fold domains c.23.4 Succinyl-CoA synthetase domains 1 -0.2245 0 167 3 0.9338 0.6474 c.2.1 NAD(P)-binding Rossmann-fold domains c.58.1 Aminoacid dehydrogenase-like, N-terminal domain 11 0.0241 0.233 167 11 0.4582 0.9237 c.2.1 NAD(P)-binding Rossmann-fold domains d.162.1 LDH C-terminal domain-like 7 -0.0159 0.3131 167 7 0.4159 0.6354 c.2.1 NAD(P)-binding Rossmann-fold domains d.58.39 Glutamyl tRNA-reductase catalytic, N-terminal domain 1 0.36 0 167 1 1.4039 0.6257 c.2.1 NAD(P)-binding Rossmann-fold domains d.81.1 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 13 -0.0679 0.2662 167 20 0.392 1.1501 c.20.1 Initiation factor IF2/eIF5b, domain 3 c.37.1 P-loop containing nucleoside triphosphate hydrolases 1 -0.0105 0 1 458 0.0579 0.9398 c.23.1 CheY-like d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 4 -0.0532 0.3908 24 15 0.4307 0.8517 c.23.16 Class I glutamine amidotransferase-like c.26.2 Adenine nucleotide alpha hydrolases-like 2 -0.1317 0.1795 14 17 0.1069 0.6905 c.23.16 Class I glutamine amidotransferase-like c.37.1 P-loop containing nucleoside triphosphate hydrolases 3 0.1531 0.2203 14 458 0.645 1.022 c.23.16 Class I glutamine amidotransferase-like c.8.3 Carbamoyl phosphate synthetase, small subunit N-terminal domain 1 0.3003 0 14 1 0.3758 0.4189 c.23.16 Class I glutamine amidotransferase-like d.161.1 ADC synthase 1 -0.0879 0 14 4 -0.208 0.5593 c.23.16 Class I glutamine amidotransferase-like d.52.2 GMP synthetase C-terminal dimerisation domain 1 0.084 0 14 1 0.6308 0.4189 c.23.4 Succinyl-CoA synthetase domains d.142.1 Glutathione synthetase ATP-binding domain-like 1 -0.2989 0 3 9 -0.3703 0.437 c.23.5 Flavoproteins c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain 3 0.0436 0.1761 9 9 0.1402 0.7036 c.23.8 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) d.142.1 Glutathione synthetase ATP-binding domain-like 1 -0.1251 0 1 9 0.6661 0.4174 c.24.1 Methylglyoxal synthase-like c.30.1 PreATP-grasp domain 1 -1.5786 0 2 7 0.3969 0.6564 c.24.1 Methylglyoxal synthase-like c.97.1 Cytidine deaminase-like 1 -0.3598 0 2 8 0.0326 0.6449 c.24.1 Methylglyoxal synthase-like d.142.1 Glutathione synthetase ATP-binding domain-like 1 0.2757 0 2 9 0.642 0.4696 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain d.120.1 Cytochrome b5-like heme/steroid binding domain 2 0.0952 0.1344 9 11 -0.0594 0.7306 c.25.1 Ferredoxin reductase-like, C-terminal NADP-linked domain d.176.1 Oxidoreductase molybdopterin-binding domain 2 -0.0567 0.0174 9 3 0.0429 0.5341 c.26.2 Adenine nucleotide alpha hydrolases-like c.31.1 DHS-like NAD/FAD-binding domain 1 0.3257 0 17 9 0.345 0.698 c.26.2 Adenine nucleotide alpha hydrolases-like d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 -0.0668 0.2457 17 24 0.7454 0.6945 c.26.2 Adenine nucleotide alpha hydrolases-like d.210.1 Argininosuccinate synthetase, C-terminal domain 1 -0.3644 0 17 1 0.27 0.5756 c.26.2 Adenine nucleotide alpha hydrolases-like d.52.2 GMP synthetase C-terminal dimerisation domain 1 0.0888 0 17 1 0.5239 0.5756 c.3.1 FAD/NAD(P)-binding domain c.47.1 Thioredoxin-like 1 -0.4411 0 26 85 -0.2589 0.8816 c.3.1 FAD/NAD(P)-binding domain d.16.1 FAD-linked reductases, C-terminal domain 3 0.0585 0.0399 26 8 -0.4078 0.9142 c.3.1 FAD/NAD(P)-binding domain d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain 5 0.1887 0.1461 26 5 0.3931 0.8556 c.30.1 PreATP-grasp domain d.142.1 Glutathione synthetase ATP-binding domain-like 5 0.3471 0.8721 7 9 0.2451 0.7139 c.31.1 DHS-like NAD/FAD-binding domain c.36.1 Thiamin diphosphate-binding fold (THDP-binding) 6 -0.1656 0.2973 9 16 0.2989 0.6945 c.32.1 Tubulin nucleotide-binding domain-like d.79.2 Tubulin C-terminal domain-like 11 0.1293 0.4846 11 11 0.6538 0.7507 c.36.1 Thiamin diphosphate-binding fold (THDP-binding) c.48.1 TK C-terminal domain-like 5 0.1406 0.3207 16 4 0.2694 0.86 c.37.1 P-loop containing nucleoside triphosphate hydrolases c.60.1 Phosphoglycerate mutase-like 1 -0.2541 0 458 5 -0.4273 1.1079 c.37.1 P-loop containing nucleoside triphosphate hydrolases c.61.1 PRTase-like 5 0.0032 0.2532 458 15 -0.007 1.1058 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.110.4 SNARE-like 1 -0.0628 0 458 14 0.4044 1.2098 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.14.1 Ribosomal protein S5 domain 2-like 6 0.0207 0.2818 458 40 -0.0916 1.1416 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.15.10 TGS-like 2 -0.069 0.3941 458 2 0.4671 0.957 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.237.1 Hypothetical protein YjiA, C-terminal domain 1 -0.1578 0 458 1 -0.0649 0.9398 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.250.1 Folate-binding domain 1 -0.129 0 458 3 -0.1972 0.9947 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.31.1 Cdc48 domain 2-like 1 -0.3398 0 458 1 0.274 0.9398 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.48.1 RecA protein, C-terminal domain 1 -0.1143 0 458 1 -0.7636 0.9398 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.52.3 Prokaryotic type KH domain (KH-domain type II) 2 -0.2548 0.1608 458 3 0.1916 1.0366 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.52.8 Fe-S cluster assembly (FSCA) domain-like 1 0.1027 0 458 4 0.0563 1.0246 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.58.11 EF-G C-terminal domain-like 6 0.3232 1.53 458 6 0.8263 1.1564 c.37.1 P-loop containing nucleoside triphosphate hydrolases d.75.2 DNA repair protein MutS, domain I 2 0.0652 0.0631 458 2 0.0801 0.9557 c.37.1 P-loop containing nucleoside triphosphate hydrolases f.37.1 ABC transporter transmembrane region 3 -0.0987 0.0496 458 3 -0.5625 1.1162 c.37.1 P-loop containing nucleoside triphosphate hydrolases g.50.1 FYVE/PHD zinc finger 1 0.118 0 458 26 -0.2961 1.487 c.45.1 (Phosphotyrosine protein) phosphatases II d.142.2 DNA ligase/mRNA capping enzyme, catalytic domain 1 0.2528 0 14 3 0.0535 0.2886 c.47.1 Thioredoxin-like g.49.1 Cysteine-rich domain 3 0.2982 0.067 85 6 -0.8341 0.8128 c.51.1 Class II aaRS ABD-related d.104.1 Class II aaRS and biotin synthetases 5 0.0798 0.1824 6 24 0.2201 0.6918 c.51.1 Class II aaRS ABD-related d.67.1 ThrRS/AlaRS common domain 1 -0.1609 0 6 2 0.3186 0.5282 c.52.3 Eukaryotic RPB5 N-terminal domain d.78.1 RPB5-like RNA polymerase subunit 2 -0.0928 0.3036 2 3 0.4633 1.3544 c.55.2 Creatinase/prolidase N-terminal domain d.127.1 Creatinase/aminopeptidase 1 0.1754 0 1 10 1.1205 0.5498 c.55.3 Ribonuclease H-like e.8.1 DNA/RNA polymerases 1 -0.1247 0 22 10 0.4869 0.7474 c.55.4 Translational machinery components d.79.3 L30e-like 1 -0.3536 0 4 10 -0.645 1.0738 c.55.4 Translational machinery components d.91.1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 1 -0.174 0 4 1 0.1954 1.0449 c.59.1 MurD-like peptide ligases, peptide-binding domain c.72.2 MurD-like peptide ligases, catalytic domain 1 0.3779 0 1 4 -0.7733 0.2981 c.61.1 PRTase-like d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 0.3714 0 15 24 0.2142 0.7156 c.62.1 vWA-like d.109.2 C-terminal, gelsolin-like domain of Sec23/24 3 -0.0384 0.1653 7 3 0.1702 0.7966 c.62.1 vWA-like g.41.10 Zn-finger domain of Sec23/24 5 0.0479 0.1154 7 5 -0.0234 0.7496 c.66.1 S-adenosyl-L-methionine-dependent methyltransferases d.282.1 SSo0622-like 1 -0.3459 0 56 1 -0.5146 0.6122 c.71.1 Dihydrofolate reductase-like c.97.1 Cytidine deaminase-like 1 0.11 0 2 8 -0.0914 0.6734 c.71.1 Dihydrofolate reductase-like d.117.1 Thymidylate synthase/dCMP hydroxymethylase 1 0.0612 0 2 1 0.2376 0.4211 c.73.1 Carbamate kinase-like c.82.1 ALDH-like 1 0.071 0 5 19 -0.2015 0.7834 c.73.1 Carbamate kinase-like d.58.18 ACT-like 1 0.1612 0 5 5 -0.103 0.6544 c.79.1 Tryptophan synthase beta subunit-like PLP-dependent enzymes d.58.18 ACT-like 1 -0.1697 0 17 5 0.26 0.5073 c.8.1 Phosphohistidine domain d.142.1 Glutathione synthetase ATP-binding domain-like 2 -0.0298 0.2038 2 9 0.867 0.405 c.8.2 LeuD/IlvD-like c.83.1 Aconitase iron-sulfur domain 2 -0.2819 0.0678 3 2 0.4482 0.3185 c.8.5 GroEL apical domain-like g.50.1 FYVE/PHD zinc finger 1 -0.5719 0 14 26 -0.3837 1.3172 c.80.1 SIS domain d.153.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 0.1834 0 5 24 0.5063 0.6298 c.81.1 Formate dehydrogenase/DMSO reductase, domains 1-3 d.15.4 2Fe-2S ferredoxin-like 2 -0.2109 0.4107 2 13 0.3994 0.7031 c.81.1 Formate dehydrogenase/DMSO reductase, domains 1-3 d.58.1 4Fe-4S ferredoxins 2 -0.0039 0.2163 2 5 1.4234 1.1513 c.84.1 Phosphoglucomutase, first 3 domains d.129.2 Phosphoglucomutase, C-terminal domain 2 1.9265 0.2003 5 2 -0.1274 0.3037 c.94.1 Periplasmic binding protein-like II d.50.2 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 1 0.1296 0 2 1 -0.0241 0.1424 d.100.1 L9 N-domain-like d.99.1 Ribosomal protein L9 C-domain 1 0.0766 0 1 1 0.1961 0 d.101.1 Ribonuclease PH domain 2-like d.14.1 Ribosomal protein S5 domain 2-like 2 -0.9413 0.0092 2 40 0.3387 0.6796 d.104.1 Class II aaRS and biotin synthetases d.67.1 ThrRS/AlaRS common domain 2 0.0422 0.0066 24 2 0.0985 0.7228 d.109.2 C-terminal, gelsolin-like domain of Sec23/24 g.41.10 Zn-finger domain of Sec23/24 3 0.0929 0.2186 3 5 -0.1936 0.9732 d.110.3 PYP-like sensor domain (PAS domain) d.144.1 Protein kinase-like (PK-like) 5 1.0799 0.1357 8 502 0.0896 0.7964 d.120.1 Cytochrome b5-like heme/steroid binding domain d.176.1 Oxidoreductase molybdopterin-binding domain 2 -0.152 0.1518 11 3 0.1023 0.5172 d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase d.14.1 Ribosomal protein S5 domain 2-like 7 -0.1522 0.2526 15 40 0.148 0.8882 d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase d.271.1 HSP90 C-terminal domain 4 -0.2412 0.396 15 4 0.8929 0.8104 d.122.1 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase e.11.1 Type II DNA topoisomerase 1 0.1905 0 15 2 -0.4728 0.7023 d.133.1 Molybdenum cofactor-binding domain d.145.1 FAD-binding domain 2 0.0648 0.0711 2 9 -0.0474 0.7235 d.133.1 Molybdenum cofactor-binding domain d.15.4 2Fe-2S ferredoxin-like 2 0.0743 0.2755 2 13 0.6624 0.8383 d.133.1 Molybdenum cofactor-binding domain d.41.1 CO dehydrogenase molybdoprotein N-domain-like 2 0.097 0.1158 2 2 -0.6605 0.6067 d.133.1 Molybdenum cofactor-binding domain d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like 1 0.0926 0 2 1 0.0646 0.6331 d.139.1 PurM C-terminal domain-like d.79.4 PurM N-terminal domain-like 2 -0.353 0.4824 2 2 0.9866 0 d.14.1 Ribosomal protein S5 domain 2-like d.271.1 HSP90 C-terminal domain 4 0.0313 0.405 40 4 0.7449 0.8404 d.14.1 Ribosomal protein S5 domain 2-like d.50.1 dsRNA-binding domain-like 2 -0.3433 0.2337 40 2 -0.0019 0.7575 d.14.1 Ribosomal protein S5 domain 2-like d.58.11 EF-G C-terminal domain-like 5 0.2354 1.5187 40 6 0.9179 0.9386 d.14.1 Ribosomal protein S5 domain 2-like d.58.26 GHMP Kinase, C-terminal domain 5 0.1272 0.118 40 5 -0.7201 0.6771 d.14.1 Ribosomal protein S5 domain 2-like e.11.1 Type II DNA topoisomerase 1 -0.0694 0 40 2 -0.6208 0.7346 d.144.1 Protein kinase-like (PK-like) d.169.1 C-type lectin-like 1 -0.1557 0 502 1 -1.6998 0.653 d.144.1 Protein kinase-like (PK-like) d.20.1 UBC-like 1 0.4095 0 502 34 0.9585 1.2844 d.144.1 Protein kinase-like (PK-like) d.211.1 Ankyrin repeat 1 0.0817 0 502 31 -0.6019 0.9084 d.144.1 Protein kinase-like (PK-like) d.219.1 PP2C-like 1 0.0453 0 502 24 -0.2838 0.851 d.144.1 Protein kinase-like (PK-like) g.44.1 RING/U-box 4 -0.0631 0.4082 502 100 -0.1807 0.935 d.145.1 FAD-binding domain d.15.4 2Fe-2S ferredoxin-like 2 0.0095 0.2044 9 13 0.7098 0.8808 d.145.1 FAD-binding domain d.41.1 CO dehydrogenase molybdoprotein N-domain-like 2 0.0323 0.0447 9 2 -0.6131 0.6255 d.145.1 FAD-binding domain d.58.32 FAD-linked oxidases, C-terminal domain 5 -0.0326 0.2018 9 5 -0.3034 0.6455 d.145.1 FAD-binding domain d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like 1 -0.0225 0 9 1 0.112 0.5751 d.148.1 Hect, E3 ligase catalytic domain d.15.1 Ubiquitin-like 1 -0.493 0 8 42 1.4394 2.2491 d.15.1 Ubiquitin-like d.3.1 Cysteine proteinases 1 -0.1759 0 42 37 -1.4723 2.2629 d.15.4 2Fe-2S ferredoxin-like d.41.1 CO dehydrogenase molybdoprotein N-domain-like 2 0.0228 0.1597 13 2 -1.3229 0.7569 d.15.4 2Fe-2S ferredoxin-like d.58.1 4Fe-4S ferredoxins 2 0.2069 0.1943 13 5 1.024 1.3016 d.15.4 2Fe-2S ferredoxin-like d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like 1 -0.1765 0 13 1 -0.5978 0.7176 d.15.8 Translation initiation factor IF3, N-terminal domain d.68.1 Translation initiation factor IF3, C-terminal domain 1 -0.2458 0 2 1 1.0508 0.2185 d.16.1 FAD-linked reductases, C-terminal domain d.58.1 4Fe-4S ferredoxins 1 -0.2791 0 8 5 1.7257 1.2828 d.166.1 ADP-ribosylation d.297.1 WGR domain-like 3 -0.1488 0.1902 3 3 -0.3726 0.4333 d.166.1 ADP-ribosylation g.39.1 Glucocorticoid receptor-like (DNA-binding domain) 1 -0.0828 0 3 10 0.3119 0.7181 d.2.1 Lysozyme-like g.3.1 Plant lectins/antimicrobial peptides 2 -0.3929 0.2435 4 3 -0.6433 0.6042 d.220.1 Metal cation-transporting ATPase, ATP-binding domain N d.58.17 HMA, heavy metal-associated domain 2 -0.5073 1.1888 5 5 0.7277 0.4613 d.224.1 SufE/NifU d.52.6 BolA-like 1 0.0589 0 2 1 -0.3687 0.1251 d.240.1 Lesion bypass DNA polymerase (Y-family), little finger domain e.8.1 DNA/RNA polymerases 1 -0.0042 0 1 10 -1.2385 0.4207 d.297.1 WGR domain-like g.39.1 Glucocorticoid receptor-like (DNA-binding domain) 1 -0.1017 0 3 10 0.6845 0.7889 d.41.1 CO dehydrogenase molybdoprotein N-domain-like d.87.2 CO dehydrogenase flavoprotein C-terminal domain-like 1 -0.0863 0 2 1 0.7251 0.3888 d.51.1 Eukaryotic type KH-domain (KH-domain type I) d.58.7 RNA-binding domain, RBD 3 -0.1815 0.3252 14 138 -0.2476 0.9619 d.58.7 RNA-binding domain, RBD g.40.1 Retrovirus zinc finger-like domains 1 0.1302 0 138 4 -0.5133 1.3187 d.58.7 RNA-binding domain, RBD g.44.1 RING/U-box 1 1.7151 0 138 100 -0.0732 0.8986 d.79.3 L30e-like d.91.1 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 1 0.1795 0 10 1 0.8404 0.5824 f.21.1 Transmembrane di-heme cytochromes f.32.1 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 1 -0.7279 0 1 1 -0.5495 0