Research
Modeling compositional dynamics based on GC and purine contents of protein-coding sequences
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* Corresponding author: Jun Yu Jun.Yu@Kaust.edu.sa
Plant Stress Genomics Research Center, Division of Chemical and Life Sciences and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia
Biology Direct 2010, 5:63 doi:10.1186/1745-6150-5-63
Published: 8 November 2010Additional files
Additional file 1:
Correlations between genome-wide GC content and GC contents at three codon positions and between genome-wide purine content and purine contents at three codon positions.
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Additional file 2:
Expected and observed nucleotide compositions across the three domains of life (46 archaea, 686 bacteria, and 826 eukaryotes).
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Additional file 3:
Expected and observed codon compositions across the three domains of life (46 archaea, 686 bacteria, and 826 eukaryotes).
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Additional file 4:
Expected and observed amino acid compositions across the three domains of life (46 archaea, 686 bacteria, and 826 eukaryotes).
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Additional file 5:
Comparison between expected and observed amino acid compositions.
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Additional file 6:
Amino acid exchange matrices in Escherichia coli, fruit fly, rice, yeast, and mammal.
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