Research
Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees
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* Corresponding authors: Jörg Schultz Joerg.Schultz@biozentrum.uni-wuerzburg.de - Matthias Wolf matthias.wolf@biozentrum.uni-wuerzburg.de
- † Equal contributors
Department of Bioinformatics, University of Würzburg, Am Hubland, 97074 Würzburg, Germany
Biology Direct 2010, 5:4 doi:10.1186/1745-6150-5-4
Published: 15 January 2010Additional files
Additional file 1:
Normalized Quartet distance and Robinson-Foulds plots. Similar to Figures 2 and 4, but showing per-branch Quartet distances as a normalized standard i.e. divided by number of splits. Robinson-Foulds Distances are given in absolute and normalized versions.
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Additional file 2:
Empirical pairwise distances. Pairwise distances of an ITS2 case study that integrates secondary structure.
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Additional file 3:
Substitution matrices. Nucleotide 4 × 4 GTR substitution model Qseq for the evolution of unpaired nucleotides and a dinucleotide 16 × 16 GTR substitution model Qstruct.
Format: PDF Size: 19KB Download file
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