Table 1 |
||||
|
DNA and RNA stacking energies for the first 2 codond letters and the strong-weak codon classification for the 20 amino acids |
||||
|
1st/2nd base |
Amino acid |
RNA stacking [68] |
S/W theory [69] |
|
|
|
||||
|
GC |
Ala |
-2.70 |
-3.42 |
SSS |
|
GU |
Val |
-2.04 |
-2.24 |
SWS |
|
AC |
Thr |
-2.04 |
-2.24 |
WSS |
|
GG |
Gly |
-1.97 |
-3.26 |
SSW |
|
CC |
Pro |
-1.97 |
-3.26 |
SSS |
|
GA |
Asp/Glu |
-1.66 |
-2.35 |
SWW |
|
UC |
Ser |
-1.66 |
-2.35 |
WSS |
|
CG |
Arg |
-1.44 |
-2.36 |
SSW |
|
CU |
Leu |
-1.29 |
-2.08 |
SWS |
|
AG |
Ser/Arg |
-1.29 |
-2.08 |
WSW |
|
AU |
Ile/Met |
-1.27 |
-1.10 |
WWS |
|
UU |
Phe/Leu |
-1.04 |
-0.93 |
WWS |
|
AA |
Asn/Lys |
-1.04 |
-0.93 |
WWW |
|
CA |
His/Gln |
-0.78 |
-2.11 |
SWW |
|
UG |
Cys/Trp |
-0.78 |
-2.11 |
WSW |
|
UA |
Tyr/Stop |
-0.12 |
-1.33 |
WWW |
|
|
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|
Novozhilov and Koonin Biology Direct 2009 4:44 doi:10.1186/1745-6150-4-44 |
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