Table 2 |
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|
Comparison between HMMs and MRC sequences |
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|
COG3577 MRC sequence |
DDI MRC sequence |
SASPase MRC sequence |
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|
|
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|
HMM profile |
Score |
E value |
HMM profile |
Score |
E value |
HMM profile |
Score |
E value |
|
|
||||||||
|
Osvaldo |
16.7 |
2.3e-05 |
NIX1 |
30.3 |
3.5e-08 |
Osvaldo |
14.7 |
3.7e-05 |
|
COG5550 |
-5.1 |
0.019 |
412/Mdg1 |
16.0 |
5.7e-05 |
Reina |
-2.3 |
3.2e-04 |
|
Caulimoviridae |
-11.9 |
0.04 |
Athila |
8.0 |
1.4e-04 |
Chrofung |
-4.8 |
9.4e-04 |
|
Alpharetroviridae |
-19.6 |
0.048 |
Del |
7.1 |
2.6e-04 |
TF |
-3.3 |
0.0025 |
|
Del |
-17.5 |
0.051 |
Micropia/Mdg3 |
-2.7 |
8.5e-04 |
Del |
-3.6 |
0.0025 |
|
Galadriel |
-26.3 |
0.21 |
COG3577 |
-11.8 |
9.0e-04 |
Mag |
-3.9 |
0.0093 |
|
Mag |
-17.1 |
0.22 |
SASPase |
-1.3 |
0.0024 |
Micropia/Mdg3 |
-14.0 |
0.012 |
|
DDI |
-67.8 |
0.71 |
Osvaldo |
-4.4 |
0.0034 |
Errantiviridae |
-1.3 |
0.015 |
|
Lentiviridae |
-25.4 |
0.87 |
Reina |
-13.2 |
0.004 |
412/Mdg1 |
-9.0 |
0.043 |
|
Chrofung |
-11.5 |
0.0051 |
DDI |
-57.8 |
0.076 |
|||
|
|
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|
The comparison was performed using the MRCs as queries to the HMM search at GyDB with hmmpfam. We only summarize the most significant (top) hits of similarity. |
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|
Llorens et al. Biology Direct 2009 4:3 doi:10.1186/1745-6150-4-3 |
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