Research
Bioinformatic flowchart and database to investigate the origins and diversity of Clan AA peptidases
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* Corresponding author: Carlos Llorens carlos.llorens@uv.es
1 Institut Cavanilles de Biodiversitat i Biología Evolutiva, Universitat de València, Paterna, Valencia, Spain
2 Biotechvana, Parc Cientific, Universitat de Valencia, Paterna, Valencia, Spain
3 CIBER de Epidemiología y Salud Pública (CIBERESP), Barcelona, Spain
Biology Direct 2009, 4:3 doi:10.1186/1745-6150-4-3
Published: 27 January 2009Additional files
Additional file 1:
Clan AA phylogeny used as guide tree. By clicking the name of each OTU in this tree, the user can locate a file at GyDB providing information about the sequence selected, including a link to its Genbank accession at NCBI. If the sequence has no GyDB file, the links takes the user directly to the Genbank accession.
Format: ZIP Size: 220KB Download file or display content in a new window
Additional file 2:
Clan AA aspartic peptidases: alignment URLs. All alignments performed in this study are freely available online. This table summarizes and provides links to the different alignments URLs. By clicking the name of each alignment, the user can locate the alignment in various formats. By default, the alignment is presented in a shaded format that facilitates visualization of the sequence patterns, and provides links to the Genbank accession of the different sequences aligned.
Format: ZIP Size: 1KB Download file