Table 4 |
||||||||||||
|
Proportions of synonymous sites (S%) and estimates of Ka, Ks and ω |
||||||||||||
|
Method |
κR - κY > 0.4 |
κR - κY < -0.4 |
|κR - κY| ≤ 0.4 |
|||||||||
|
|
||||||||||||
|
S% |
Ka |
Ks |
ω |
S% |
Ka |
Ks |
ω |
S% |
Ka |
Ks |
ω |
|
|
|
||||||||||||
|
human-dog orthologs |
||||||||||||
|
GY |
24.80% |
0.0691 |
0.4936 |
0.1483 |
24.72% |
0.0723 |
0.4676 |
0.1639 |
24.34% |
0.0874 |
0.5347 |
0.1704 |
|
YN |
25.09% |
0.0674 |
0.4900 |
0.1531 |
24.96% |
0.0700 |
0.4750 |
0.1695 |
24.27% |
0.0928 |
0.5412 |
0.1746 |
|
MYN |
23.88% |
0.0664 |
0.5748 |
0.1361 |
26.16% |
0.0711 |
0.4495 |
0.1800 |
24.22% |
0.0939 |
0.5596 |
0.1727 |
|
γ-MYN |
23.93% |
0.0681 |
0.6462 |
0.1266 |
26.28% |
0.0733 |
0.4962 |
0.1713 |
24.29% |
0.0962 |
0.6227 |
0.1620 |
|
human-mouse orthologs |
||||||||||||
|
GY |
25.86% |
0.0901 |
0.7163 |
0.1291 |
25.65% |
0.0961 |
0.7118 |
0.1390 |
25.52% |
0.1128 |
0.7422 |
0.1543 |
|
YN |
26.07% |
0.0877 |
0.7002 |
0.1344 |
25.69% |
0.0923 |
0.6904 |
0.1465 |
25.31% |
0.1091 |
0.7439 |
0.1564 |
|
MYN |
24.83% |
0.0863 |
0.8321 |
0.1157 |
26.93% |
0.0940 |
0.6527 |
0.1566 |
25.24% |
0.1090 |
0.7734 |
0.1526 |
|
γ-MYN |
24.91% |
0.0894 |
0.9501 |
0.1058 |
27.10% |
0.0980 |
0.7390 |
0.1468 |
25.35% |
0.1140 |
0.8934 |
0.1398 |
|
human-chimp orthologs |
||||||||||||
|
GY |
25.47% |
0.0273 |
0.0663 |
0.5118 |
25.18% |
0.0262 |
0.0579 |
0.5685 |
25.98% |
0.0228 |
0.0420 |
0.4364 |
|
YN |
25.79% |
0.0302 |
0.0646 |
0.5237 |
25.33% |
0.0297 |
0.0564 |
0.5790 |
23.81% |
0.0506 |
0.0595 |
0.3893 |
|
MYN |
24.34% |
0.0299 |
0.0719 |
0.4792 |
26.87% |
0.0307 |
0.0516 |
0.6312 |
23.72% |
0.0493 |
0.0601 |
0.3863 |
|
γ-MYN |
24.34% |
0.0305 |
0.0741 |
0.4768 |
26.89% |
0.0324 |
0.0530 |
0.6309 |
23.72% |
0.0515 |
0.0626 |
0.3847 |
|
|
||||||||||||
|
Wang et al. Biology Direct 2009 4:20 doi:10.1186/1745-6150-4-20 |
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