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Open Access Research

Pitfalls of the most commonly used models of context dependent substitution

Helen Lindsay1, Von B Yap2, Hua Ying1 and Gavin A Huttley1*

Author Affiliations

1 Computational Genomics Laboratory, John Curtin School of Medical Research, The Australian National University, Canberra, ACT 0200, Australia

2 Department of Statistics and Applied Probability, National University of Singapore, Kent Ridge, Singapore

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Biology Direct 2008, 3:52 doi:10.1186/1745-6150-3-52

Published: 16 December 2008

Additional files

Additional file 1:

Modified version of PyCogent library. Archive of the PyCogent library developed for this study from PyCogent version 1.1.

Format: ZIP Size: 1.6MB Download file or display content in a new window

Open Data

Additional file 2:

Scripts used in the study. Archive of stand-alone web site presenting the central scripts used in this study.

Format: ZIP Size: 70KB Download file or display content in a new window

Open Data