Biology Direct

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The evolution of strand preference in simulated RNA replicators with strand displacement: Implications for the origin of transcription

Nobuto Takeuchi1*, Laura Salazar1, Anthony M Poole2,3 and Paulien Hogeweg1

Author Affiliations

1 Theoretical Biology and Bioinformatics Group, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands

2 Department of Molecular Biology and Functional Genomics, Stockholm University, SE-10691, Stockholm, Sweden

3 School of Biological Sciences, University of Canterbury, Private Bag 4800, Christchurch, New Zealand

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Biology Direct 2008, 3:33 doi:10.1186/1745-6150-3-33

Published: 11 August 2008

Additional files

Additional file 1:

1 Figure 11. This figure shows the results of additional simulations where the decay rate of double-stranded molecules is reduced by a factor of 10 relative to that of single-stranded molecules. The figure is referred to in the Authors' response to Reviewer's report 3.

2 Figure 12. This figure shows the additional results that reveal a non-linear anti-correlation that evolves between kSP and kDP as a result of diverging selection under finite diffusion. This figure is referred to in the section, ''The effect of biases in the replication rates of single strands (a case where kSP kSM')".

3 The description of the ODE model with complex formation for a system of two replicator species.

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