|
properties of lancelet GFP-like genes and their products. |
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| B. floridae genes |
JGI gene model ID – JGI model name |
Comments |
Identity to other LanFP proteins, % |
ESTs (source tissues) |
Identity (%) and gene ID of the best match in B. lanceolatum/in copepods |
|
|
|||||
| LanFP1 |
7875 – FGENESH2_PG.SCAFFOLD_1000062 |
48–90 |
21 (egg, larva, neurula) |
51% 169125805/32% 33243028 |
|
| LanFP2 |
7877 – FGENESH2_PG.SCAFFOLD_1000064 |
51–99 |
33 (adult, egg, gastrula, neurula) |
57% 169125805/36% 33243028 |
|
| LanFP3 |
31376 – FGENESH2_PG.SCAFFOLD_264000004 |
49–61 |
19 (neurula, gastrula, egg, larva) |
51% 169125805/34% 33243028 |
|
| LanFP4 |
7879 – FGENESH2_PG. SCAFFOLD_1000066 |
51–98 |
15 (egg, larva) |
57% 169125805/36% 33243028 |
|
| LanFP5 |
3655 – ESTEXT_FGENESH2_PG.C_4080036 |
two fused GFP-like proteins? |
50–54 |
1 (adult) |
39% 33243028/76% 169125805 (84% 169125805) |
| LanFP6 |
7878 – FGENESH2_PG.SCAFFOLD_1000065 |
51–97 |
1 (larva) |
54% 169125805/37% 33243028 |
|
| LanFP7 |
21366 – ESTEXT_FGENESH2_PG.C_2370020 |
48–60 |
1 (larva) |
56% 169125805/40% 33243028 |
|
| LanFP8 |
11646 – FGENESH2_PG.SCAFFOLD_58000032 |
54–70 |
91% 169125797/40% 33243028 |
||
| LanFP9 |
33503 -FGENESH2_PG.SCAFFOLD_549000016 |
49–55 |
52% 169125805/33% 33243028 |
||
| LanFP10 |
11648 – FGENESH2_PG.SCAFFOLD_58000034 |
48–82 |
77% 169125805/37% 33243032 |
||
| LanFP11 |
35422 – FGENESH2_PG.SCAFFOLD_722000001 |
48–56 |
72% 169125805/38% 33243028 |
||
| LanFP12 |
7881 – FGENESH2_PG.SCAFFOLD_1000068 |
49–55 |
69% 169125805/30% 33243032 |
||
| LanFP13 |
3657 – FGENESH2_PG.SCAFFOLD_408000038 |
50–84 |
79% 169125805/36% 33243034 |
||
| 7876 – FGENESH2_PG.SCAFFOLD_1000063 |
similar to LanFP7, internal deletion |
||||
| 43701 – FGENESH2_PG.SCAFFOLD_149000048 |
similar to LanFP11; long unrelated N-terminal extension – probably prediction artefact |
||||
| 43778 – FGENESH2_PG.SCAFFOLD_150000025 |
similar to LanFP13 |
||||
| 31374 -FGENESH2_PG.SCAFFOLD_264000002 |
similar to LanFP6; long insertion |
||||
| 31375 -FGENESH2_PG.SCAFFOLD_264000003 |
similar to LanFP12 |
||||
| 3656- FGENESH2_PG.SCAFFOLD_408000037 |
similar to LanFP10 |
||||
| 33504- FGENESH2_PG.SCAFFOLD_549000017 |
similar to LanFP4 |
||||
| 11648 – FGENESH2_PG.SCAFFOLD_58000033 |
similar to LanFP6 |
||||
| 11649 – FGENESH2_PG.SCAFFOLD_58000035 |
similar to LanFP7 |
||||
| 11650 -FGENESH2_PG.SCAFFOLD_58000036 |
similar to LanFP7 |
||||
| 35196 – FGENESH2_PG.SCAFFOLD_771000005 |
similar to LanFP4 |
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Baumann et al. Biology Direct 2008 3:28 doi:10.1186/1745-6150-3-28 |
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