|
KEGG pathways elucidated from the human spermatogenesis data. |
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| KEGG pathway |
Affymetrix |
Illumina |
|
|
|
|||
| ω |
σwtrep |
σμ |
|
|
|
|||
| HSA00190 : Oxidative phosphorylation |
✓ |
✓ |
✓ |
| HSA00970 : Aminoacyl-tRNA synthetases |
✓ |
✓ |
✓ |
| HSA03010 : Ribosome |
✓ |
✓ |
✓ |
| HSA03050 : Proteosome |
✓ |
✓ |
✓ |
| HSA00010 : Glycolysis/Gluconeogenesis |
✓ |
✓ |
|
| HSA00030 : Pentose phosphate pathway |
✓ |
✓ |
|
| HSA00193 : ATP synthesis |
✓ |
✓ |
|
| HSA00530 : Aminosugars metabolism |
✓ |
✓ |
|
| HSA00640 : Propanoate metabolism |
✓ |
✓ |
|
| HSA03020 : RNA polymerase |
✓ |
✓ |
|
| HSA03060 : Protein export |
✓ |
✓ |
|
| HSA04110 : Cell cycle |
✓ |
✓ |
|
| MMU03010 : Ribosome |
✓ |
✓ |
|
| HSA04120 : Ubiquitin mediated proteolysis |
✓ |
||
| HSA00020 : Citrate cycle (TCA cycle) |
✓ |
||
| HSA00240 : Pyrimidine metabolism |
✓ |
||
| HSA00251 : Glutamate metabolism |
✓ |
||
| HSA00510 : N-glycan biosynthesis |
✓ |
||
| HSA03022 : Basal transcription factors |
✓ |
||
| HSA04520 : Adherens junction |
✓ |
||
| HSA04530 : Tight junction |
✓ |
||
| HSA00620 : Pyruvate metabolism |
✓ |
||
|
The first column indicates the name of the KEGG pathways. Only KEGG pathways with EASE score ≤ 0.05 and count ≥ 5 are included. The second column indicates KEGG pathways found by Affymetrix. The third and fourth columns indicate the KEGG pathways found by using σμ and σwtrep respectively. Cutoff criteria of EASE score ≤ 0.05 and count ≥ 5 were applied. | |||
Wong et al. Biology Direct 2008 3:23 doi:10.1186/1745-6150-3-23 |
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