Table 2

Number of TP and FP genes based on P-value ranking.


σμ
 σwtrep


Concentration (in pM)
 TP
 FP
 TP
 FP
 No. of common TP
0.01 vs 0
 0
 34
 0
 34
 0
0.03 vs 0.01
 0
 34
 0
 34
 0
0.1 vs 0.03
 7
 27
 9
 25
 7
0.3 vs 0.1
 14
 20
 22
 12
 14
1 vs 0.3
 30
 4
 33
 1
 30
3 vs 1
 30
 4
 34
 0
 30
10 vs 3
 33
 1
 34
 0
 33
30 vs 10
 34
 0
 34
 0
 34
100 vs 30
 33
 1
 34
 0
 33
300 vs 100
 4
 30
 26
 8
 4
1000 vs 300
 9
 25
 16
 18
 8

The first column indicates the 11 test cases of pair-wise treatment conditions. The second and third columns indicate the number of TP and FP genes respectively for using σμ as the summary statistic. Similarly, column four and five indicate the results for using σwtrep. The last column indicates the result for the number of common TP genes found by both σμ and σwtrep.

Wong et al. Biology Direct 2008 3:23   doi:10.1186/1745-6150-3-23

Open Data