Table 9 |
||||||||
|
The number of the Subset 1 RefSeq alignments at various levels of the in-frame identity. Fractions give the differences in the number of alignments by each method and Splign expressed as percentage of the total of sequences in the set. |
||||||||
| 80% |
85% |
90% |
95% |
99% |
99.5% |
99.9% |
100% |
|
|
|
||||||||
| Splign |
13757 |
13747 |
13740 |
13733 |
13723 |
13688 |
12426 |
10323 |
| Sim4 |
13214 |
13179 |
13145 |
13110 |
13044 |
12958 |
11662 |
9680 |
| -3.91 |
-4.09 |
-4.29 |
-4.49 |
-4.89 |
-5.26 |
-5.50 |
-4.63 |
|
| Spidey |
13185 |
13176 |
13169 |
13162 |
13146 |
13089 |
11720 |
9706 |
| -4.12 |
-4.11 |
-4.11 |
-4.11 |
-4.16 |
-4.31 |
-5.09 |
-4.44 |
|
| BLAT |
13507 |
13498 |
13491 |
13484 |
13473 |
13441 |
12271 |
10284 |
| -1.80 |
-1.79 |
-1.79 |
-1.79 |
-1.80 |
-1.78 |
-1.12 |
-0.28 |
|
| GMAP |
13744 |
13733 |
13726 |
13718 |
13706 |
13671 |
12408 |
10307 |
| -0.09 |
-0.10 |
-0.10 |
-0.11 |
-0.12 |
-0.12 |
-0.13 |
-0.12 |
|
| SPA |
13715 |
13706 |
13698 |
13691 |
13676 |
13635 |
12373 |
10275 |
| -0.30 |
-0.30 |
-0.30 |
-0.30 |
-0.34 |
-0.38 |
-0.38 |
-0.35 |
|
|
|
||||||||
|
Kapustin et al. Biology Direct 2008 3:20 doi:10.1186/1745-6150-3-20 |
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