Table 8 |
||||||||
|
The number of the Subset 1 alignments at various levels of the in-frame identity. Fractions give the differences in the number of alignments by each method and Splign expressed as percentage of the total of sequences in the set. |
||||||||
| 80% |
85% |
90% |
95% |
99% |
99.5% |
99.9% |
100% |
|
|
|
||||||||
| Splign |
67342 |
67241 |
67105 |
66766 |
65767 |
64938 |
50968 |
35839 |
| Sim4 |
63968 |
63723 |
63465 |
62986 |
61668 |
60622 |
47820 |
34033 |
| -4.68 |
-4.88 |
-5.05 |
-5.24 |
-5.68 |
-5.99 |
-4.37 |
-2.50 |
|
| Spidey |
65276 |
65182 |
65066 |
64766 |
63844 |
62867 |
48714 |
34451 |
| -2.86 |
-2.86 |
-2.83 |
-2.77 |
-2.67 |
-2.87 |
-3.13 |
-1.92 |
|
| BLAT |
64017 |
63932 |
63817 |
63545 |
62747 |
62115 |
49946 |
35632 |
| -4.61 |
-4.59 |
-4.56 |
-4.47 |
-4.19 |
-3.91 |
-1.42 |
-0.29 |
|
| GMAP |
66568 |
66463 |
66317 |
65956 |
64856 |
64058 |
50589 |
35680 |
| -1.07 |
-1.08 |
-1.09 |
-1.12 |
-1.26 |
-1.22 |
-0.53 |
-0.22 |
|
| SPA |
66777 |
66669 |
66516 |
66152 |
65042 |
64186 |
50669 |
35679 |
| -0.78 |
-0.79 |
-0.82 |
-0.85 |
-1.01 |
-1.04 |
-0.41 |
-0.22 |
|
|
|
||||||||
|
Kapustin et al. Biology Direct 2008 3:20 doi:10.1186/1745-6150-3-20 |
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