Table 7 |
|||||||
|
The number of the Subset 1 RefSeq alignments at various levels of the overall identity. Fractions give the differences in the number of alignments by each method and Splign expressed as percentage of the total of sequences in the set. |
|||||||
| 85% |
90% |
95% |
99% |
99.5% |
99.9% |
100% |
|
|
|
|||||||
| Splign |
13883 |
13880 |
13870 |
13781 |
13540 |
11345 |
8276 |
| Sim4 |
13880 |
13873 |
13832 |
13615 |
13287 |
10521 |
7151 |
| -0.02 |
-0.05 |
-0.27 |
-1.20 |
-1.82 |
-5.94 |
-8.10 |
|
| Spidey |
13765 |
13602 |
13379 |
13085 |
12802 |
10601 |
7587 |
| -0.85 |
-2.00 |
-3.54 |
-5.01 |
-5.32 |
-5.36 |
-4.96 |
|
| BLAT |
13878 |
13866 |
13843 |
13680 |
13355 |
11180 |
8167 |
| -0.04 |
-0.10 |
-0.19 |
-0.73 |
-1.33 |
-1.19 |
-0.79 |
|
| GMAP |
13879 |
13875 |
13864 |
13753 |
13481 |
11291 |
8066 |
| -0.03 |
-0.04 |
-0.04 |
-0.20 |
-0.42 |
-0.39 |
-1.51 |
|
| SPA |
13878 |
13868 |
13855 |
13738 |
13502 |
11290 |
8174 |
| -0.04 |
-0.09 |
-0.11 |
-0.31 |
-0.27 |
-0.40 |
-0.73 |
|
|
|
|||||||
|
Kapustin et al. Biology Direct 2008 3:20 doi:10.1186/1745-6150-3-20 |
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