Table 2

The number of best alignments with A-content of 75% or higher in the 3' exon. The numbers are based on the alignments with the highest overall identity.


Sim4
Spidey
BLAT
GMAP
SPA
Splign

%% of all mRNAs
15.5
0.57
0.98
0.04
2.12
0.01
%% of RefSeq mRNAs
22.1
0.31
1.67
0.02
2.72
0.00

Kapustin et al. Biology Direct 2008 3:20   doi:10.1186/1745-6150-3-20