|
Compartmentization based on local alignments computed using different methods. N1 is the number of mRNA sequences with 75% or higher coverage by alignments to any single chromosome or unplaced scaffold.N2 is the number of mRNA sequences with 75% or higher coverage by high-identity alignments to any single chromosome or unplaced scaffold. N3 is the number of sequences for which at least one compartment was identified with the minimum compartment identity of 75%. The computing time was collected on Intel Xeon 2.33 GHz/8 GB Linux box. |
||||
| MB/RM |
MB/WM |
Compart |
||
|
|
||||
| Human 36.3 |
N1 |
232342 (94.95%) |
234565 (95.86%) |
238851 (97.61%) |
| N2 |
224054 (91.56%) |
226293 (92.48%) |
229101 (93.63%) |
|
| N3 |
231939 (94.79%) |
234207 (95.71%) |
236928 (96.82%) |
|
| time (min) |
179 |
70 |
32 |
|
| Mouse 37.1 |
N1 |
227831 (98.44%) |
228681 (95.17%) |
232245 (96.65%) |
| N2 |
222746 (92.70%) |
223704 (93.09%) |
226107 (94.09%) |
|
| N3 |
226964 (94.45%) |
227895 (94.84%) |
230478 (95.91%) |
|
| time (min) |
372 |
59 |
29 |
|
Kapustin et al. Biology Direct 2008 3:20 doi:10.1186/1745-6150-3-20 |
||||