Biology Direct

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Splign: algorithms for computing spliced alignments with identification of paralogs

Yuri Kapustin*, Alexander Souvorov, Tatiana Tatusova and David Lipman

Biology Direct 2008, 3:20 doi:10.1186/1745-6150-3-20

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miRTar: an integrated system for identifying miRNA-target interactions in human

Justin Hsu, Chih-Min Chiu, Sheng-Da Hsu, Wei-Yun Huang, Chia-Hung Chien, Tzong-Yi Lee, Hsien-Da Huang BMC Bioinformatics 2011, 12:300 (26 July 2011)

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Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family

William Q Gillis, John St John, Bruce Bowerman, Stephan Q Schneider BMC Evolutionary Biology 2009, 9:207 (20 August 2009)

Research article   Open Access

Genomic complexity of the variable region-containing chitin-binding proteins in amphioxus

Larry J Dishaw, M Gail Mueller, Natasha Gwatney, John P Cannon, Robert N Haire, Ronda T Litman, Chris T Amemiya, Tatsuya Ota, Lee Rowen, Gustavo Glusman, Gary W Litman BMC Genetics 2008, 9:78 (1 December 2008)

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Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species

Oliver Keller, Florian Odronitz, Mario Stanke, Martin Kollmar, Stephan Waack BMC Bioinformatics 2008, 9:278 (13 June 2008)