How high is the level of technical noise in microarray data?
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* Corresponding author: Andrei Yakovlev andrei_yakovlev@urmc.rochester.edu
Biology Direct 2007, 2:9 doi:10.1186/1745-6150-2-9
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Review
Microarrays, deep sequencing and the true measure of the transcriptome John H Malone, Brian Oliver BMC Biology 2011, 9:34 (31 May 2011) Global measures of gene expression can now be extracted either from microarrays or from RNA-seq, which do not always seem to give the same answer. Malone and Oliver review the advantages and limitations of each and conclude that, with some important exceptions, they tell the same story.
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Research article
Herman MJ Sontrop, Perry D Moerland, René van den Ham, Marcel JT Reinders, Wim FJ Verhaegh BMC Bioinformatics 2009, 10:389 (26 November 2009) |
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Research article
Sample entropy analysis of cervical neoplasia gene-expression signatures Shaleen K Botting, Jerome P Trzeciakowski, Michelle F Benoit, Salama A Salama, Concepcion R Diaz-Arrastia BMC Bioinformatics 2009, 10:66 (20 February 2009) Patterns of gene expression indicative of cervical cancer can be detected using approximate entropy analysis of microarray datasets to identify genes displaying minimum variation in control tissue versus maximum variation in cancerous samples.
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Software
PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data Victoria Martin-Requena, Antonio Muñoz-Merida, M Gonzalo Claros, Oswaldo Trelles BMC Bioinformatics 2009, 10:16 (12 January 2009) |
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Methodology article
Determining gene expression on a single pair of microarrays Robert W Reid, Anthony A Fodor BMC Bioinformatics 2008, 9:489 (21 November 2008) |
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Research article
Lu Lu, Lai Wei, Jeremy L Peirce, Xusheng Wang, Jianhua Zhou, Ramin Homayouni, Robert W Williams, David C Airey BMC Genomics 2008, 9:444 (25 September 2008) |
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Proceedings
Mikhail G Dozmorov, Kimberly D Kyker, Paul J Hauser, Ricardo Saban, David D Buethe, Igor Dozmorov, Michael B Centola, Daniel J Culkin, Robert E Hurst BMC Bioinformatics 2008, 9(Suppl 9):S4 (12 August 2008) |
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Research
Lev Klebanov, Linlin Chen, Andrei Yakovlev Biology Direct 2007, 2:28 (7 November 2007) |