Evaluating the protein coding potential of exonized transposable element sequences

doi:10.1186/1745-6150-2-31

Biology Direct

Volume 2

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Evaluating the protein coding potential of exonized transposable element sequences

Jittima Piriyapongsa¹ , Mark T Rutledge¹ , Sanil Patel¹ , Mark Borodovsky¹^,2^,3 and I King Jordan¹

¹School of Biology, Georgia Institute of Technology, Atlanta, GA 30332, USA.

²Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA 30332, USA.

³Division of Computational Science and Engineering at College of Computing, Georgia Institute of Technology, Atlanta, GA 30332, USA.

author email corresponding author email

Biology Direct 2007, 2:31doi:10.1186/1745-6150-2-31


Published:	26 November 2007

Additional files

Additional file 1:

TE-associated protein domains. This file contains the list of 124 Pfam domains associated with TEs.

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Additional file 2:

The GC composition of Alu-derived gene fragments. Scatter plots of %G+C of second (GC2) versus third (GC3) codon positions for Alu-derived gene fragments (pink) non Alu TE-derived gene fragments (red) and non-TE associated genes (green) are shown along with linear regression trends and confidence interval.

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