Table 2

Summary of syntenic fragment analysis of 7 marine microbial species and E. coli.
Species
 CDS
 Homologous fragments
 Homologous fragments with synteny
 Syntenic fragments
 % unique to group
'Candidatus Pelagibacter ubique'
 1,332
 349,742
 99,457
 71,696
 98.8
Prochlorococcus marinus (MED4)
 1,713
 226,594
 21,304
 8,398
 99.9
Croceibacter atlanticus
 2,633
 256,645
 15,089
 1,258
 99.0
Oceanicola batsensis
 4,614
 354,793
 49,278
 532
 60.5
Oceanicaulis alexandrii
 3,365
 330,225
 36,845
 500
 31.0
Escherichia coli
 4,289
 306,293
 33,306
 406
 92.9
Parvularcula bermudensis
 2,824
 310,044
 30,809
 239
 31.8
Janibacter sp.
 4,367
 240,360
 18,570
 23
 91.3

Note that "syntenic fragments" are "homologous fragments with synteny" that pass the best hit test. The percent of syntenic fragments which are unique to the query genome, for this set of queries, is shown in the final column.

Wilhelm et al. Biology Direct 2007 2:27   doi:10.1186/1745-6150-2-27

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