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Divergence between S. cerevisiae and S. paradoxus at sites of divergence between S. mikatae and S. bayanus.1 |
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| Synonymous |
Nonsynonymous |
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|
|
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| Overall1 |
Parallel2 |
Overall3 |
Coincident |
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|
|
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| Parallel4 |
Divergent5 |
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|
|
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| Same site |
Different site |
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|
|
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| Pairs of nucleotides |
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| AC |
0.055 |
0.061 |
0.0037 (6.8%) |
0.035 (132, 57.2%) |
0.018 (217, 29.6%) |
0.012 (223, 20.0%) |
| AG |
0.198 |
0.218 |
0.0189 (9.5%) |
0.110 (1941, 50.5%) |
0.070 (459, 31.9%) |
0.054 (851, 24.6%) |
| AT |
0.044 |
0.064 |
0.0029 (6.6%) |
0.038 (116, 59.2%) |
0.015 (158, 24.0%) |
0.006 (107, 9.2%) |
| CG |
0.061 |
0.074 |
0.0053 (8.6%) |
0.039 (117, 52.7%) |
0.021 (214, 28.3%) |
0.014 (129, 18.6%) |
| CT |
0.169 |
0.208 |
0.0090 (5.3%) |
0.095 (476, 45.7%) |
0.044 (249, 21.1%) |
0.025 (310, 11.9%) |
| GT |
0.044 |
0.062 |
0.0025 (5.6%) |
0.047 (76, 76.1%) |
0.012 (143, 19.4%) |
0.007 (64, 11.1%) |
| Average |
0.095 |
0.115 |
0.0070 (7.4%) |
0.061 (2858, 53.0%) |
0.030 (1440, 26.2%) |
0.020 (1684, 17.1%) |
| Genes6 |
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| Low dN |
0.085 |
0.110 |
0.0029 (3.4%) |
0.049 (403, 45.0%) |
0.015 (135, 13.7%) |
0.011 (161, 10.1%) |
| Intermediate dN |
0.101 |
0.117 |
0.0070 (6.9%) |
0.062 (976, 52.6%) |
0.027 (435, 23.0%) |
0.018 (527, 15.2%) |
| High dN |
0.103 |
0.117 |
0.0128 (12.5%) |
0.064 (1479, 54.3%) |
0.038 (870, 32.1%) |
0.024 (996, 20.3%) |
| Chemical distance between amino acids7 |
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| 1 |
0.095 |
0.115 |
0.0070 (7.4%) |
0.060 (969, 52.7%) |
0.016 (308, 13.7%) |
0.019 (434, 16.2%) |
| 1.5 or 2 |
0.095 |
0.115 |
0.0070 (7.4%) |
0.061 (1482, 53.0%) |
0.032 (729, 27.9%) |
0.018 (892, 15.4%) |
| 2.5 or 3 |
0.095 |
0.115 |
0.0070 (7.4%) |
0.053 (407, 46.7%) |
0.040 (403, 34.6%) |
0.032 (358, 28.0%) |
|
1This Table is analogous to Table 1. | ||||||
Bazykin et al. Biology Direct 2007 2:20 doi:10.1186/1745-6150-2-20 |
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