|
Divergence between D. melanogaster and D. simulans at sites of divergence between D. yakuba and D. erecta.1 |
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| Synonymous |
Nonsynonymous |
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|
|
|
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| Overall1 |
Parallel2 |
Overall3 |
Coincident |
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|
|
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| Parallel4 |
Divergent5 |
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|
|
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| Same site |
Different site |
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|
|
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| Pairs of nucleotides |
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| AC |
0.028 |
0.040 |
0.0025 (9.2%) |
0.034 (110, 86.5%) |
0.011 (99, 28.7%) |
0.009 (119, 23.7%) |
| AG |
0.055 |
0.070 |
0.0056 (10.3%) |
0.053 (431, 75.3%) |
0.023 (141, 32.7%) |
0.020 (207, 28.8%) |
| AT |
0.035 |
0.047 |
0.0024 (6.7%) |
0.041 (119, 86.4%) |
0.014 (93, 28.9%) |
0.007 (74, 15.3%) |
| CG |
0.022 |
0.031 |
0.0033 (15.0%) |
0.036 (113, 114.9%) |
0.011 (88, 35.0%) |
0.010 (91, 31.2%) |
| CT |
0.060 |
0.068 |
0.0037 (6.2%) |
0.045 (152, 65.8%) |
0.020 (103, 29.6%) |
0.010 (98, 15.3%) |
| GT |
0.027 |
0.036 |
0.0020 (7.6%) |
0.032 (58, 88.1%) |
0.010 (83, 27.9%) |
0.010 (67, 27.2%) |
| Average |
0.038 |
0.049 |
0.0033 (8.6%) |
0.040 (983, 82.2%) |
0.015 (607, 30.5%) |
0.011 (656, 22.8%) |
| Genes6 |
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| Low dN |
0.035 |
0.048 |
0.0008 (2.3%) |
0.026 (97, 53.8%) |
0.006 (41, 13.6%) |
0.004 (33, 7.9%) |
| Intermediate dN |
0.038 |
0.048 |
0.0029 (7.4%) |
0.037 (319, 77.1%) |
0.012 (175, 25.4%) |
0.009 (182, 18.5%) |
| High dN |
0.041 |
0.051 |
0.0072 (17.5%) |
0.046 (567, 90.9%) |
0.019 (391, 37.5%) |
0.015 (441, 29.1%) |
| Chemical distance between amino acids7 |
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| 1 |
0.038 |
0.049 |
0.0033 (8.6%) |
0.048 (349, 98.2%) |
0.008 (143, 16.7%) |
0.010 (160, 19.8%) |
| 1.5 or 2 |
0.038 |
0.049 |
0.0033 (8.6%) |
0.037 (461, 75.7%) |
0.016 (300, 32.0%) |
0.011 (338, 21.8%) |
| 2.5 or 3 |
0.038 |
0.049 |
0.0033 (8.6%) |
0.032 (173, 65.4%) |
0.019 (164, 39.3%) |
0.015 (158, 30.6%) |
|
1This Table is analogous to Table 1. | ||||||
Bazykin et al. Biology Direct 2007 2:20 doi:10.1186/1745-6150-2-20 |
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