Table 2

Combined NSMC and NSCS test results for the TP53 somatic mutations spectra

Class ID
Sites
Mutations
Hotspots
P(H1)/χ2

Class Ia
Synonymous
157
390
76

Non-synonymous
527
5710
385
0.990/33.4
Nonsense
78
529
59
0.023
Class IIb
Synonymous
172
391
97

Non-synonymous
495
6109
379
0.991/25.4
Nonsense
72
629
55
0.018
Class IIIc
Synonymous
217
781
151

Non-synonymous
617
11819
474
0.994/4.47
Nonsense
88
1158
76
0.011

a Class I: combined mutational spectrum of the tumor types for which H0 is rejected in comparison of synonymous vs. non-synonymous substitutions:brain, liver, lung, colon, mouth, larynx, ovary and skin.

b Class II: combined mutational spectrum of the tumor types for which the test did not find enough evidence, probably, because of the small sample size: bladder, breast, prostate, esophagus, colorectal, hematopoietic, stomach, and pancreas.

c Class III: combined Class I and Class II spectra.

Other designations are as in Table 1.

Glazko et al. Biology Direct 2006 1:4   doi:10.1186/1745-6150-1-4

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