Table 1

Overrepresented GO terms from genes with TE-derived HS sites
Clusters1
 GO id2
 GO level3
 GO name4
 Counts5
 P-values6
Immune response group
2
 GO:0009607
 4
 response to biotic stimulus
 21
 4.9 × 10-7
25


8
 1.7 × 10-2
2
 GO:0006952
 5
 defense response
 20
 1.0 × 10-6
25


8
 1.6 × 10-2
2
 GO:0006955
 6
 immune response
 20
 3.6 × 10-7
25


8
 1.3 × 10-2
2
 GO:0051707
 5
 response to other organism
 11
 1.8 × 10-4
25


5
 3.3 × 10-2
2
 GO:0009613
 6
 response to pest, pathogen or parasite
 11
 1.0 × 10-4
25


5
 2.7 × 10-2
2
 GO:0030098
 9
 lymphocyte differentiation
 3
 6.2 × 10-3
19


3
 1.6 × 10-2
Regulation group
15
 GO:0050789
 2
 regulation of biological process
 40
 4.4 × 10-8
25


17
 7.5 × 10-3
15
 GO:0050794
 3
 regulation of cellular process
 39
 2.2 × 10-8
25


17
 4.1 × 10-3
15
 GO:0050791
 3
 regulation of physiological process
 38
 2.2 × 10-8
25


15
 1.3 × 10-6
15
 GO:0051244
 4
 regulation of cellular physiological process
 38
 1.3 × 10-8
25


15
 1.3 × 10-2
Metabolism group
15
 GO:0050875
 3
 cellular physiological process
 73
 6.5 × 10-4
19


88
 3.8 × 10-3
15
 GO:0044238
 4
 primary metabolism
 63
 1.7 × 10-6
19


67
 4.8 × 10-3
15
 GO:0044237
 4
 cellular metabolism
 63
 9.0 × 10-6
19


71
 1.3 × 10-3
9
 GO:0043170
 4
 macromolecule metabolism
 26
 2.8 × 10-2
15


37
 2.0 × 10-2
19


50
 9.1 × 10-4
9
 GO:0043283
 5
 biopolymer metabolism
 18
 2.8 × 10-2
15


30
 8.0 × 10-5
19


35
 5.1 × 10-4
Cell death group
2
 GO:0043067
 6
 regulation of programmed cell death
 7
 7.8 × 10-3
19


7
 3.7 × 10-2
2
 GO:0042981
 7
 regulation of apoptosis
 7
 7.8 × 10-3
19


7
 3.7 × 10-2

1Gene coexpression, based on k-means analysis, cluster identifier.

2Biological process Gene Ontology (GO) annotation term.

3Hierarchical level (descending from 1) in the biological process GO directed acyclic graph.

4Name assigned to the GO term

5Number of genes in each cluster associated with the GO term.

6P-value associated with the over-representation of the GO term in each cluster

Mariño-Ramírez and Jordan Biology Direct 2006 1:20   doi:10.1186/1745-6150-1-20

Open Data