Biology Direct

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Rooting the tree of life by transition analyses

Thomas Cavalier-Smith

Biology Direct 2006, 1:19 doi:10.1186/1745-6150-1-19

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BioMed Central: 11 citations

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From the scala naturae to the symbiogenetic and dynamic tree of life

Ulrich Kutschera Biology Direct 2011, 6:33 (30 June 2011)

This article is part of a collection on Beyond the tree of life

Research article   Open Access Highly Accessed

Assembling networks of microbial genomes using linear programming

Catherine Holloway, Robert G Beiko BMC Evolutionary Biology 2010, 10:360 (20 November 2010)

An approach that uses linear programming and BLAST scores to capture ‘between-genome’ relationships can uncover vertical and lateral relationships among genomes and serve as an effective inference tool in its own right.

Research   Open Access Highly Accessed

Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution

Thomas Cavalier-Smith Biology Direct 2010, 5:7 (4 February 2010)

This article is part of a collection on Evolutionary Biology 150...

Research   Open Access

Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life

Ruben E Valas, Philip E Bourne Biology Direct 2009, 4:30 (25 August 2009)

This article is part of a collection on Evolutionary Biology 150...

The disparate rootings of the tree of life by Cavalier-Smith and Lake et al. converge on a single root when polarizable indels are analyzed using protein structure.

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On the origin of life in the Zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth

Armen Y Mulkidjanian, Michael Y Galperin Biology Direct 2009, 4:27 (24 August 2009)

The relatively high zinc content of living cells and its role as cofactor in many key enzymes and RNA structures might reflect the origin of life in zinc-rich environments.

Research article   Open Access Highly Accessed

Evolution of plant senescence

Howard Thomas, Lin Huang, Mike Young, Helen Ougham BMC Evolutionary Biology 2009, 9:163 (14 July 2009)

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Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

Bastien Boussau, Laurent Guéguen, Manolo Gouy BMC Evolutionary Biology 2008, 8:272 (3 October 2008)

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The Last Universal Common Ancestor: emergence, constitution and genetic legacy of an elusive forerunner

Nicolas Glansdorff, Ying Xu, Bernard Labedan Biology Direct 2008, 3:29 (9 July 2008)

This article is part of a collection on Origin and early evolution...

The Last Universal Common Ancestor developed in a protoeukaryotic, promiscuous and genetically redundant community of cells with a broad, moderate thermal profile and an RNA genome enclosed in a protonucleus.

Research   Open Access

The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis

Marco Fondi, Matteo Brilli, Giovanni Emiliani, Donatella Paffetti, Renato Fani BMC Evolutionary Biology 2007, 7(Suppl 2):S3 (16 August 2007)

Hypothesis   Open Access

Origin of phagotrophic eukaryotes as social cheaters in microbial biofilms

Gáspár Jékely Biology Direct 2007, 2:3 (19 January 2007)

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Did the last common ancestor have a biological membrane?

Gáspár Jékely Biology Direct 2006, 1:35 (27 November 2006)