Table 3 |
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|
Positive selection pressure in Treated and Untreated datasets |
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| Selection pressure |
Conditional selection pressure |
|||||
|
|
||||||
| Treated |
+a |
+ |
- |
+a |
+ |
Not + selected, or not present |
| Untreated |
+ |
-b |
+ |
+ |
Not + selected, or not present |
+ |
| Codon |
12,13,19,33,35,37,41,57,60,62,63,6477,93 71c |
10,24,30,54,73,74,82,90 53d |
None |
19, 63, 71 93e |
10, 24, 30, 35, 48, 54, 73, 82, 88, 90 |
None |
|
|
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|
a positively selected. For selection pressure, Ka/Ks > 1 and LOD > 2; for conditional selection pressure, (Ka/Ks)Y|Xa > 1, (Ka/Ks)Y|X > 1, LOD > 3 and p < 0.001. b negatively selected (Ka/Ks < 1 and LOD > 2) c codon 71 is positively selected in Treated samples (Ka/Ks > 1 and LOD > 2), and it has a Ka/Ks value greater than 1 but a LOD score less than 2 in Untreated samples. d codon 53 is positively selected in Treated samples (Ka/Ks > 1 and LOD > 2), and it has a Ka/Ks value less than 1 but a LOD score less than 2 in Untreated samples. e In Treated dataset, codon 93 is positively selected with (Ka/Ks)Y|Xa > 1, (Ka/Ks)Y|X > 1, LOD > 3 but p > 0.001. |
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|
Chen and Lee Biology Direct 2006 1:14 doi:10.1186/1745-6150-1-14 |
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