Similarity searches in genome-wide numerical data sets

doi:10.1186/1745-6150-1-13

Biology Direct

Volume 1

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Similarity searches in genome-wide numerical data sets

Galina Glazko¹^,2 , Michael Coleman¹ and Arcady Mushegian¹^,3

¹Stowers Institute for Medical Research, 1000 E 50^thSt., Kansas City MO 64110, USA

²University of Rochester Medical Center, Rochester, NY 14642, USA

³Department of Microbiology, Molecular Genetics, and Immunology, University of Kansas Medical Center, Kansas City, KS 66160, USA

author email corresponding author email

Biology Direct 2006, 1:13doi:10.1186/1745-6150-1-13


Published:	30 May 2006

Additional files

Additional data file 1:

Figure, showing proteins, associated with flagella phenotype, identified by simple psi-square and PP algorithms. Diagram: 45 COGs identified by psi-square when COG1298 was used as a query; 37 COGs related to flagella biogenesis and function; 46 COGs identified by PP algorithm.

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Additional data file 2:

Figure, showing proteins associated with flagella phenotype, identified by psi-square with combined query and TTG algorithms. Diagram: 73 COGs identified by psi-square; two other sets are the same as for Figure 2 in the main text.

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Additional data file 3:

Tables 1, 2, 3, 4.

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Additional data file 4:

Figure, showing a) Factors likely regulating Poly(A)-tail synthesis and maturation, found by psi-square using Ptal as a query. Graph vertices are connected only if the corresponding proteins were found in the same purification. b) The intersection of three protein sets: 18 proteins found by psi-square when Ptal was used as a query; 20 proteins identified as factors regulating Poly(A)-tail synthesis and maturation by Gavin et al. (2002); 33 proteins found by psi-square with purification-made query.

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Additional data file 5:

Figure showing factors likely regulating Poly(A)-tail synthesis and maturation, found by psi-square using purification as a query.

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