Research
Similarity searches in genome-wide numerical data sets
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* Corresponding author: Arcady Mushegian arm@stowers-institute.org
1 Stowers Institute for Medical Research, 1000 E 50th St., Kansas City MO 64110, USA
2 University of Rochester Medical Center, Rochester, NY 14642, USA
3 Department of Microbiology, Molecular Genetics, and Immunology, University of Kansas Medical Center, Kansas City, KS 66160, USA
Biology Direct 2006, 1:13 doi:10.1186/1745-6150-1-13
Published: 30 May 2006Additional files
Additional data file 1:
Figure, showing proteins, associated with flagella phenotype, identified by simple psi-square and PP algorithms. Diagram: 45 COGs identified by psi-square when COG1298 was used as a query; 37 COGs related to flagella biogenesis and function; 46 COGs identified by PP algorithm.
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Additional data file 2:
Figure, showing proteins associated with flagella phenotype, identified by psi-square with combined query and TTG algorithms. Diagram: 73 COGs identified by psi-square; two other sets are the same as for Figure 2 in the main text.
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Additional data file 3:
Tables 1, 2, 3, 4.
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Additional data file 4:
Figure, showing a) Factors likely regulating Poly(A)-tail synthesis and maturation, found by psi-square using Ptal as a query. Graph vertices are connected only if the corresponding proteins were found in the same purification. b) The intersection of three protein sets: 18 proteins found by psi-square when Ptal was used as a query; 20 proteins identified as factors regulating Poly(A)-tail synthesis and maturation by Gavin et al. (2002); 33 proteins found by psi-square with purification-made query.
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Additional data file 5:
Figure showing factors likely regulating Poly(A)-tail synthesis and maturation, found by psi-square using purification as a query.
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