|
Probabilities of being true SS for first 40 statistically most highly ranked putative 5' SS. Probabilities are calculated based on number of times we spot certain nonamer acting as SS as opposed to splice-like signal in our learning set [see Subsection Splice Sites sensor] |
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| Nonamer |
Probability |
Spotted as true signal |
Spotted as true-like signal |
|
|
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| CCGGTAAGT |
0.701 |
270 |
115 |
| CCGGTGAGT |
0.676 |
755 |
361 |
| CGGGTAAGT |
0.668 |
270 |
134 |
| ACGGTGAGT |
0.625 |
608 |
364 |
| CGGGTGAGT |
0.587 |
586 |
412 |
| GCGGTAAGT |
0.575 |
184 |
136 |
| TCGGTAAGT |
0.568 |
218 |
166 |
| CAGGTAAGC |
0.557 |
1326 |
1055 |
| TCGGTGAGT |
0.556 |
503 |
401 |
| ACGGTAAGT |
0.551 |
245 |
200 |
| GCGGTGAGT |
0.530 |
569 |
504 |
| CAGGTGAGT |
0.523 |
2561 |
2335 |
| CAGGTAAGT |
0.509 |
1437 |
1388 |
| AAGGTGAGT |
0.508 |
2013 |
1952 |
| AAGGTAAGC |
0.504 |
1057 |
1039 |
| CGCGTAAGT |
0.5 |
36 |
36 |
| CCGGTAAGG |
0.489 |
157 |
164 |
| CAGGTAAGG |
0.484 |
1667 |
1777 |
| CGGGTAAGC |
0.482 |
145 |
156 |
| AAGGTAAGT |
0.469 |
1389 |
1569 |
| CAGGTAAGA |
0.469 |
1917 |
2172 |
| ACGGTAAGG |
0.468 |
162 |
184 |
| TCGGTAAGC |
0.457 |
101 |
120 |
| CCGGTAAGC |
0.456 |
134 |
160 |
| GAGGTAAGT |
0.454 |
978 |
1175 |
| ACGGTACGT |
0.453 |
29 |
35 |
| AAGGTACGT |
0.452 |
193 |
234 |
| AAGGTACGC |
0.423 |
85 |
116 |
| GAGGTGAGT |
0.420 |
1717 |
2371 |
| AAGGTAAGG |
0.418 |
1318 |
1833 |
| AAGGTAAGA |
0.416 |
1610 |
2261 |
| ACGGTAAGC |
0.408 |
118 |
171 |
| GAGGTAAGC |
0.408 |
634 |
921 |
| TCGGTAAGA |
0.408 |
148 |
215 |
| CCGGTAAGA |
0.403 |
160 |
237 |
| CGGGTAAGG |
0.397 |
219 |
332 |
| ACGGTAAGA |
0.397 |
165 |
251 |
| AAGGTGAGC |
0.395 |
1325 |
2031 |
| CAGGTGAGC |
0.394 |
2073 |
3185 |
| CAGGTACGT |
0.392 |
231 |
358 |
Churbanov et al. Biology Direct 2006 1:10 doi:10.1186/1745-6150-1-10 |
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